Natronococcus occultus: Natoc_2183
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Entry
Natoc_2183 CDS
T02426
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nou
Natronococcus occultus
Pathway
nou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Natoc_2183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nou03019
]
Natoc_2183
03016 Transfer RNA biogenesis [BR:
nou03016
]
Natoc_2183
Enzymes [BR:
nou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Natoc_2183
Messenger RNA biogenesis [BR:
nou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Natoc_2183
Transfer RNA biogenesis [BR:
nou03016
]
Prokaryotic type
tRNA degradation factors
Natoc_2183
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AGB37964
UniProt:
L0K0U5
LinkDB
All DBs
Position
complement(2100144..2101424)
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AA seq
426 aa
AA seq
DB search
MSDDAQAQAGTAEGQGPVEISEEVARHLENKREELFEKFEIRDEFPEDVLEEARERTEGV
QAEISEEVDDREDLRELTTWTTDPIDAQDFDDAISVAERDDEYVLWVHIADVTHYVHPES
AMWEEAVERANTVYLPGYTIHMLPPVLAETVCSLVPNEDRLAHTVEMHLDKENLGYENIE
IYKSVIQSDERLTYTQAENRLEDPDAPLHEENVLVHELADRMHEQRKEDGSLVLNPARDR
AHTIIEECMLKANKAVTHELMWSRGVEAMYRVHPQPSPDEWSEALREIQDLEGVSIPGDK
WDDPRKAVNATLEDAPGRQLDKIQWAVMKVMPRAKYMNDPFGGHHALNFEIYGHFTSPIR
RLSDLINHWIVYQNDVPENLIELCDRASDKQKDAEQCEREYKQFLQEVGLDPAAVNNRGI
EVVDDA
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacgcacaggcccaggccggcacggccgagggtcagggcccggtcgaaatc
tccgaggaggtcgcgcgccacctcgagaacaagcgcgaggagctgttcgagaagttcgag
atccgcgacgagttccccgaggacgtccttgaggaagcccgcgaacgcacggagggggtc
caggccgaaatctccgaggaggtcgacgaccgcgaggacctccgggagctgacgacctgg
acgaccgaccccatcgacgcccaggacttcgacgacgccatctcggtcgcggaacgcgac
gacgagtacgtcctctgggttcacatcgccgacgtcacccactacgtccaccccgagtcg
gcgatgtgggaggaagccgtcgagcgcgccaacacggtctacctgcccggctacacgatc
catatgcttccgccggtgctggccgagacggtctgttcgctcgtccccaacgaggatcgg
ctggcccacaccgtcgagatgcacctcgataaggagaacctgggctacgagaacatcgag
atctacaagtcggtcatccagtccgacgaacggctcacctacacccaggccgagaaccgc
ctcgaggatcccgacgcgccgttacacgaggagaacgtcctcgtccacgaactggccgat
cggatgcacgaacagcgcaaggaggacggctcgctcgtgctcaatcctgcgcgggatcgc
gctcacacgatcatcgaggagtgtatgctgaaggccaacaaggccgtcacgcacgaactc
atgtggtctcgtggcgttgaggcgatgtaccgggttcatccccagccgagccccgacgag
tggtccgaggcgctgcgagagatccaggacctcgagggcgtctcgatccccggcgacaag
tgggacgacccccggaaggcggtcaacgccaccctcgaggacgcccctggccgccagctc
gacaagatccagtgggccgtgatgaaggtgatgccccgcgcgaagtacatgaacgatccc
ttcggcggccatcacgcgctgaatttcgagatctacggccactttaccagtccgattcgt
cgactcagcgacctgatcaaccactggatcgtctaccagaacgacgtcccggagaacctg
atcgagctctgcgatcgggccagcgacaaacagaaggacgccgagcagtgcgaacgggag
tacaagcagttcctccaggaggtcggtctcgaccccgcggccgtcaacaaccgcggtatc
gaggtcgtcgacgacgcgtag
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