Novosphingobium sp. P6W: TQ38_003940
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Entry
TQ38_003940 CDS
T05550
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
nov
Novosphingobium sp. P6W
Pathway
nov02020
Two-component system
nov02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nov00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TQ38_003940 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TQ38_003940 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nov03021
]
TQ38_003940 (rpoN)
Transcription machinery [BR:
nov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TQ38_003940 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
HTH_Crp_2
Phage_CII
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AXB75772
LinkDB
All DBs
Position
1:784973..786487
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AA seq
504 aa
AA seq
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MALGPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIETFIGEALDANPLLDVGAAASGDSV
EMPGEPLPDERRTTLEGSSVDQLIGEGRGADDRPLDIDTGALDRDRDTGDGQLRADSADW
GAEIRGGGGEEGPGIDDRPALGWTLVEHLEAQVGAAARDSLTAGVAHYIIGQLDEAGYLP
VSLSELAGDLGLELAEMEAGLALVQALDPTGVGARTLAECIALQAREADRYDPLMAKLID
NLDLLARGELPRLKRLCGVDDEDFADMLGELRGYDPKPGLRFGGMPSAAVTPDILVTPRV
DSGWDIALNQATLPRLIVNRGYYVELKGNCADKTSRAWLSDKLADANWLIKALDQRQKTI
LKVAAELVKQQEGFFRHGVSQLRPLTLRTVAEAIGMHESTVSRVTSNKFLNCPRGTYELK
FFFSSGVASADGEGGASAEAVKAAIRQLIDAEDAKAILSDDALVDLLKAKGFELARRTVA
KYREAIGLGSSVQRRRHKALAAAR
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggctctggggccacgcctggatatcaggcagagccagtcgctggtgatgacgccgcag
cttcagcaggcgatcaagctgctggcgctgtccaatctcgaaatcgaaacctttatcggc
gaggcgctcgacgccaatccgttgctggacgtaggcgcggcggcatccggcgattcggtc
gaaatgcctggcgagccgctgccggacgaacggcgcaccacgctggaaggttcttcggtc
gaccagttgatcggtgaaggccgcggtgccgatgaccgtccgctagacatcgatacaggc
gcacttgaccgcgaccgcgacaccggcgacgggcagctgcgcgccgatagcgccgactgg
ggcgccgaaatacgcggcggcggcggtgaggaaggccccggaatcgatgaccgccctgca
ctgggctggacgctggtcgaacatctggaagcgcaggtcggcgctgccgcgcgtgattcg
ctgaccgccggggtagcgcattacatcatcggccagcttgacgaggcagggtatctgccg
gtcagcttgtcggaactggcgggcgatctcggcctcgaactggccgagatggaggctggc
ctcgcgctggtacaggccctcgatcccaccggtgtcggcgcgcgcacgcttgcggaatgt
atcgcgctacaggcccgcgaggcggaccgctacgatccgctgatggccaagctgatcgac
aacctcgacctgctggcgcgcggcgaactgcctcggctcaagcgcctttgcggggtggac
gacgaggacttcgccgacatgctgggcgaactgcggggttatgatcccaagccgggcctg
cgtttcggcggaatgccgagcgcggcggtgacgcccgatatcctcgtcacgccccgcgtc
gatagcggctgggacattgcgctcaaccaggcgacgttgcccaggcttatcgtcaaccgc
ggctactatgtcgaactcaagggcaactgcgccgacaagacctcgcgcgcctggctgtct
gacaagctggccgatgccaactggctgataaaggcgctcgaccagcggcagaagaccatt
ctcaaggtcgccgccgaactggtgaagcagcaggagggcttttttcgccacggcgtctcg
cagctcaggccgctgacgctgcgtacggtggccgaggcgatcggcatgcacgaatcgacg
gtcagccgcgtcacgtcgaacaaattcctcaactgtccgcgcggcacctatgagctgaaa
ttcttcttcagctcgggcgttgcatcggcggacggggagggcggggcttcggcggaagcg
gtcaaggctgccattcgccagctgatcgacgccgaggatgccaaggcaatcctgtccgac
gacgcgctggtggacctgctcaaggccaagggtttcgagctggcccggcgcacggttgcc
aagtaccgcgaggcgatcgggctgggcagttcagtgcagcgccgccgccataaagctctt
gccgcagcccgatag
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