Novosphingobium sp. P6W: TQ38_004370
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Entry
TQ38_004370 CDS
T05550
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nov
Novosphingobium sp. P6W
Pathway
nov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TQ38_004370 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nov03019
]
TQ38_004370 (pnp)
03016 Transfer RNA biogenesis [BR:
nov03016
]
TQ38_004370 (pnp)
Enzymes [BR:
nov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TQ38_004370 (pnp)
Messenger RNA biogenesis [BR:
nov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TQ38_004370 (pnp)
Transfer RNA biogenesis [BR:
nov03016
]
Prokaryotic type
tRNA degradation factors
TQ38_004370 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_2
BioW
Motif
Other DBs
NCBI-ProteinID:
AXB75847
UniProt:
A0A2Z5E889
LinkDB
All DBs
Position
1:862764..865091
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AA seq
775 aa
AA seq
DB search
MFDVQTVSMEWGGKTLTLETGRIARQANGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSSAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVIAQVLSY
DGDTEADVLAMIAASAALTISGVPFMGPIGAARVGYVDGAYTLNPKQDAALKDGELDLVV
AATGDAVMMVESEAKELTEEVMLGAVVFAHDEIKKVVNLIIDLAEKAAKEPWDVDLTDNT
ADIKAKLKKAVGKDITAAYKLTDKSARSNALNAARAKAKEAFSGETPQTQMVAIKTIKKL
EAEIVRGAILKDGKRIDGRKLDQVRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTKE
SEQMIDGLEGLSYSSFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKED
FPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLVRPVSGIAMGLILEGKDFAVLSD
ILGDEDHLGDMDFKVAGTEVGITTMQMDIKIAGITREIMGKALEQAKAGRAHILGEMTKA
LGSSRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISSS
DTAQIEAAKKWILGIVEEAEVGKVYQGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVE
KPTDVVKEGQAVYVKVLEIDPRGKVRLSMRVVDQETGAELEDTRPAREPREGGDRGPRSG
GGDRDGGRGGDRRGPRREGGGRGGDRGPRGGGDRGPRGGSEGGNPDHLPAFLKED
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtacagaccgtaagcatggagtggggcggtaagaccctcaccctggaaacc
ggccgcatcgcccgccaggcgaacggcgcagtcctcgccacctacggcgaaaccgtggtg
ctttgcgcggttaccgccgccaagtcggtgaaggaaggccaggacttcttcccgctgacc
gttcactaccaggaaaagttctcctcggccggccgcatccccggcggcttcttcaagcgt
gagcgcggcgcgaccgaaaaggaaacgctgaccagccgcctgatcgaccgtccgatccgc
ccgctgttccccgaaggtttctacaacgaaatcaacgtcatcgcccaggttctgagctat
gacggcgacaccgaagccgacgtccttgcgatgatcgccgcctcggctgccctgacgatt
tcgggcgttcccttcatgggcccgatcggcgctgcgcgcgtcggctatgtcgacggcgca
tacacgctgaaccccaagcaggacgccgccctcaaggacggtgaactcgatctggtcgta
gccgccaccggcgacgccgtgatgatggtggaatcggaagccaaggaactgaccgaagag
gtcatgctgggcgccgtcgtgttcgcgcatgacgaaatcaagaaggtcgtgaacctcatc
atcgacctggccgaaaaggccgccaaggaaccttgggacgtcgacctgacggacaacacc
gccgacatcaaggcgaagctcaagaaggccgtcggcaaggacatcaccgcagcctacaag
ctgaccgacaagtcggcccgctccaacgccctgaacgccgcgcgcgccaaggcgaaggaa
gcgttctcgggcgagaccccgcagacgcagatggtcgccatcaagaccatcaagaagctg
gaagcggaaatcgttcgcggcgccatcctcaaggacggcaagcgcattgacggccgcaag
ctcgaccaggttcgcccgatcgaagcgatcgtcggcttcctgccgcgcacccacggttcg
gcgctgttcacgcgcggcgaaacgcagtcgatctgcaccaccacccttggcaccaaggaa
tcggagcagatgatcgacggcctggaaggcctgtcgtactcgtcgttcatgctgcactac
aacttcccgccctactcggtcggtgaagtcggccgcttcggcgccccgggccgccgcgaa
gtcggccacggcaagctggcatggcgcgcgctgcacccggtgctgcccgccaaggaagac
ttcccctacacgatccgcgttctctcggacatcaccgagtcgaacggttcgtcctcgatg
gccaccgtctgcggcggttcgctctcgatgatggacgccggcgtgccgctggttcgcccg
gtttcgggcatcgccatgggcctgatcctggaaggcaaggacttcgcggttctttccgac
atcctgggtgacgaagatcacctcggcgacatggacttcaaggtcgctggcaccgaagtc
ggcatcaccacgatgcagatggacatcaagatcgcgggcatcacgcgcgagatcatgggc
aaggcgcttgagcaggccaaggccggccgcgcgcacatcctgggtgagatgaccaaggca
ctcggttcttcgcgtaccgaactgtcggcgcacgccccgcgcatcgagacgatccagatc
gacaagtcgaagatccgtgacgtcatcggcaccggcggcaaggtcatccgcgagatcgtc
gccgagaccggcgccaaggtcgacatcgacgacgaggggatcatcaagatctcgtcctcc
gacaccgcacagatcgaggccgccaagaagtggatcctcggcatcgtggaagaagcggaa
gtcggcaaggtctaccagggcaaggtcgtcaacatcgtcgacttcggcgctttcgtgaac
ttcatgggcggcaaggacggtctcgtccacgtttccgaaatgaagaacgagcgcgttgaa
aagccgaccgacgtcgtgaaggaaggccaggcggtttacgtcaaggtcctcgagatcgac
ccgcgcggcaaggttcgcctgtcgatgcgcgtcgtcgaccaggaaaccggcgccgagctg
gaagacacccgtcctgcccgtgaaccccgcgaaggcggcgatcgcggtccgcgcagcggc
ggcggcgatcgcgacggtgggcgcggcggtgaccgtcgtggtccgcgccgtgaaggcggc
ggtcgcggcggcgatcgtggtccccgcggtggcggcgatcgcggcccgcgcggcggcagc
gaaggcggcaacccggatcacctgccggccttcctcaaggaagactga
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