Novosphingobium sp. P6W: TQ38_004560
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Entry
TQ38_004560 CDS
T05550
Name
(GenBank) type I secretion system permease/ATPase
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
nov
Novosphingobium sp. P6W
Pathway
nov02010
ABC transporters
nov03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
nov00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
TQ38_004560
03070 Bacterial secretion system
TQ38_004560
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
nov02000
]
TQ38_004560
02044 Secretion system [BR:
nov02044
]
TQ38_004560
Transporters [BR:
nov02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
TQ38_004560
Secretion system [BR:
nov02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
TQ38_004560
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
Peptidase_C39
SMC_N
ABC_ATPase
AAA_22
AAA_29
AAA_16
SbcC_Walker_B
AAA_18
DUF87
AAA_21
HUTI_composite_bact
Motif
Other DBs
NCBI-ProteinID:
AXB75878
LinkDB
All DBs
Position
1:912220..914394
Genome browser
AA seq
724 aa
AA seq
DB search
MNDMHNPELTETLPPRDDSGLFAFATVLALHRIAVDPQQLRHGLGHDRAIDADDLKRLAK
RQDEVRAKSSRGSFDKLRQMPLPALANGPAGWFVIARVADDEVLIQPPCHSVDGVQPQIM
KIGRDALEAMWSGELLLVTTREGVGGVSRAFDVSWFIPQIVKYRRLIGEVLLITLGINLL
GLASPLFFQNVIDKVLVHNTLDTLTILVIGFGVVSVWETAFGWLRTRLYSETSQKIDVEL
GAKLFRHLLGLNLSYFEARRVGDIAMRVRQLETIREFLTNASLTVLVDPIFTVIFLIVMW
FYSTQLFLISILTIPCYIAVAVFITGPLRARIEEKFERSAANNALLIESIGGIQTVKAGA
VEPQWQDRWERQLAGYSFASQKVINLGNTGSQLIQLISKINMVLILYFGARAVIDKDLTV
GGLVAFNMFAQRVSGPVIRMAQLWQEFQQVRIAIERLGDVLNQPIEPGTGSRVALPQLKG
AVAFESVRFRYGLDGPWTLDDIDLIVPAGSTLGIVGSSGSGKSTLTKLLQRLYVPGAGRV
TIDGVDIAQIDPAWLRRQIGVVLQENLLFSRTIRENIALSNPAMPIEKVMAAAELAGAHE
FIVKLPQGYDTLVEERGTNLSGGQRQRLAIARALVNQPRILILDEATSALDAESEEIIQR
NLKAMAAGRTVIIIAHRLSAVRQCDTLIALEAGRIVERGNHEELLRANGRYADLHRRQSG
GIAA
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacatgcataatcccgagctgacagaaacactgcccccgcgagacgatagcggt
cttttcgcgttcgcgacggttctcgcgctgcaccgcattgccgtcgatccacaacagctg
cgccacggccttgggcatgaccgcgcgatcgatgccgacgatctcaagcgtctcgccaag
cgtcaggacgaggtccgcgccaaatcgtcgcgaggcagtttcgacaagctgcgccagatg
ccgctacccgcgctcgccaatggccccgcgggctggttcgtcatcgcccgggtggcggac
gacgaagttctgatccaaccgccgtgccactcagttgacggcgtgcagccgcagatcatg
aagatcggtcgtgacgcgctcgaggcaatgtggtcgggcgagctgctactggtgaccacc
cgcgaaggcgttggcggggtcagccgggcctttgacgtcagctggttcattccgcagatc
gtcaagtaccggcgtctgatcggcgaggtcctgcttattacgctggggatcaatcttctc
gggctcgcctcaccgctattcttccagaatgtcatcgacaaggtgctcgtccacaatacc
ctcgacaccctgaccatcctggtgatcgggttcggcgtcgtgtccgtctgggaaacggcc
ttcggatggctgcgtacccggctctattccgagacgagccagaagatcgatgtcgagctc
ggggcaaagctgttccgccacctgctcggcctcaacctctcctacttcgaggcgcgccgg
gtcggcgacatcgccatgcgcgttcgccaactcgagacgatccgggagtttctcactaac
gcatcgttgaccgtactggtcgatccgatcttcacggtcatcttcctgatcgtgatgtgg
ttctactccacccagcttttcttgatctcgatcctgacgatcccctgctacatcgcggtc
gccgttttcatcaccggtccgctgcgcgcgcggatcgaagagaagtttgagcggtccgca
gccaacaacgccctgctcatcgagagcatcggtggcatccagacggtaaaggccggcgcg
gtcgagccgcagtggcaggatcgctgggagcgccagctcgccggctacagcttcgcctcg
cagaaggtcatcaatctcggcaacactggcagccagctgatccagctgatctccaagatc
aacatggtgctgatcctctatttcggcgcgcgcgcggtgatcgataaggacctgaccgtc
ggcggactggtggcgttcaacatgttcgcgcagcgggtttccggtccggtcatccgcatg
gcgcagctgtggcaggaattccagcaggtgcgcattgccatcgagcgtctcggtgacgtg
ctcaaccagcctatcgagcccggtaccggcagccgtgtagcattgccgcagctcaagggt
gccgttgctttcgaaagcgtgagatttcgctacggtctggatggtccctggaccctcgac
gacatcgacctgatcgttccggcgggctcgacactgggcatcgtcggttcttccggatcg
ggcaagtcgacgctcacaaagcttctgcagcggctctacgtgcccggggccgggcgcgtc
accatcgacggtgtcgacatcgcccaaatcgatccggcatggctccgtcggcagatcggc
gtcgtcctccaggaaaacctcctgttcagccggacaatccgcgagaacatcgcgctgtcc
aatccggccatgccgatcgagaaggtcatggccgcagccgaactcgccggggcgcacgag
ttcatcgtcaagctgccgcagggctatgacaccctcgtcgaagagcgcggtaccaatctg
tctggaggtcagcgccagcgtctcgcgatcgcccgcgccctagtcaatcagccgcgcatt
ctcattctcgatgaggcgaccagcgcgctcgatgccgagagcgaggagatcatccagcgc
aacctcaaggccatggcggcaggacgcaccgtgatcatcattgctcatcgcctttccgcc
gtccggcagtgcgataccctgatcgccctcgaggccggccgcattgtcgagcgcggtaac
catgaagagctcttgcgggcaaatggacgctatgccgacctccatcgccgccagagcgga
gggattgccgcatga
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