Novosphingobium sp. P6W: TQ38_007600
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Entry
TQ38_007600 CDS
T05550
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nov
Novosphingobium sp. P6W
Pathway
nov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TQ38_007600 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nov03400
]
TQ38_007600 (mfd)
Enzymes [BR:
nov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TQ38_007600 (mfd)
DNA repair and recombination proteins [BR:
nov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TQ38_007600 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
UB2H
Cas3-like_C_2
SecA_DEAD
AAA_16
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXB76390
UniProt:
A0A2Z5E9R9
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All DBs
Position
1:complement(1575752..1579252)
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AA seq
1166 aa
AA seq
DB search
MTDFSRILSATTPLTLASVTRGSQPLVMADLARAADSAKSSGRAVFVADNEAAMRAVAEA
AQFFAPELDVIEFPAWDCLPYDRASPALSVSARRLAALHRLQLKRSGPQLLVTTTNAMLQ
RVLTPFRIRESVRLLKPGMEVGHESLIALLRRQGYQRTDTAIDAGEFAVRGSIFDIVPSG
LKSGEDAAGLRLDFFGDELETLRLFDTGTQRSTGTVPDHLLLPASEALLDDDTVKRFRTR
YREMFGANATADPLYQAVSDGRRLAGMEHWLPLFEDRLVTLFDHLGDDDLVIIDSPALGA
VDERFTDIADYHRARTETSGQKAGSYRPLRIDSLYLNREEFDFAVTALPVHRADPFAQPE
SAKVIDFGFGNARDFTPERARGDNAYEAAAKHLQAVGKSGRKAILAAYSTGSRARLASIL
GEAKGPEPRLADTWQEALGLAVQGRSAALVLPLETGFSNQSVEVITEQDILGDRLVRRKK
RKKDSDAFLAELAALTPGDLIVHMDHGIGRYEGLQSIPVGKSPHDCVMLTYSGGDKLYIP
VENLDVLSRYGSESEGAVLDKLGGEAWQKRRAKLKERIREIAGELMKTAAERALREAPAL
VAEESSFNQFIDRFPWQETEDQEAAIGDTLEDLASGRPMDRLVCGDVGFGKTEVALRAAF
VAAMAGQQVAVVAPTTLLARQHYSGFADRFAGFPLNVGRLSRLVPEKEAKATREGLADGT
MDVVCGTHAILSKTVSFKRLGLVIVDEEQRFGVNHKEKLKQLRADVHVLTLTATPIPRTL
QMAMSGLRELSTIQTPPVDRLAVRTYVMEWDEMVMREALLREHHRGGQSFIVVPRIADMA
EVEDWLSKNVPEVKVISAHGQMSAGDVEERMSAFYEGKYEVLLSTTIVESGIDIPRANTI
IIHRADRFGLAQLYQLRGRVGRSKLRAYAYLTTPPGQALSEVSEKRLKVLGDLDSLGAGF
QLASHDLDIRGAGNLLGDEQSGHIREVGFELYQSMLEDAILAARAGGVGLEKDTSGLSPQ
ITVEAPIMIPEEYVPDLAVRMALYRRLNDADSRAEIESLSAEMIDRFGPLPQPTANLVQL
IQIKRQAIEAHIAKIDVGPRGTLVSFHNDSFPNPEGLIAYADRLQGAIKLRPDNKLVLQR
AWGDPKSRLNGLLQLTKGLSAVARKG
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttttcccgcatcctctccgccacgacgccgctgacgctggcttcggtgacg
cgcggctcccagccgctggtcatggccgacctcgcccgcgctgccgacagcgccaaaagc
agcggccgcgctgtcttcgtcgccgataacgaggccgcgatgcgcgccgtcgccgaggcc
gcgcagttcttcgcgcctgaactcgacgtgatcgagtttccggcgtgggactgcctgcct
tacgaccgcgccagccccgcgctatcggtcagcgcccggcgcctggccgcgctgcaccgg
ctgcaactgaaacgcagtggcccgcagcttctcgtcaccacgacgaacgccatgctccag
cgcgtgctcaccccgtttcgcatccgcgaatcggtgcgtctgctcaagcctggcatggaa
gtgggccatgaaagcctgatcgcgctgctgcgccgtcagggttaccagcgcaccgacacc
gcgatcgacgcgggcgaattcgccgtgcgcggctcgatcttcgacatcgtgccatcgggc
cttaagtccggggaagacgcagccggcctgcgcctcgacttcttcggggacgagctggaa
acgctgcgcctgttcgacaccggcactcagcgctctaccggcacggtgcccgatcacctg
ctgttgcccgccagcgaggcactgctggacgacgacaccgtcaagcgttttcgcacccgc
taccgcgagatgttcggcgccaatgccaccgccgatccgctttatcaggcggtcagcgac
gggcgccgcctcgccggcatggaacactggctgccgctgttcgaggaccggctggtcacc
ctgttcgaccaccttggcgacgacgaccttgtcatcatcgacagccccgccctgggcgcc
gttgacgagcgttttaccgatatcgccgactatcaccgggcacgcaccgaaacctcaggg
caaaaggccggttcctaccgtccgctgcggatcgattcgctctacctgaaccgcgaagaa
ttcgacttcgccgtcaccgcgctgccggtccaccgcgccgatcccttcgcccagcccgaa
tcggccaaggtcatcgacttcggtttcggcaacgcccgcgatttcacgcccgaacgcgcg
cgcggcgacaacgcctacgaagccgccgcaaagcatcttcaggccgtcggcaagtcaggc
cgcaaagccatccttgccgcctactccaccggcagccgggcccgccttgcctcgattctg
ggtgaggcaaaaggccccgaaccgcgccttgccgatacctggcaggaagcgctcggcctt
gccgttcagggccgttccgccgcgctggtactgccgctcgaaaccgggttctcgaaccag
tcggtcgaggtcatcaccgagcaggacattcttggcgaccgccttgtccgccgcaagaag
cgcaaaaaggactccgacgccttcctcgccgaactggcggcgctgacgcccggcgacctg
atcgtccacatggaccacggcatcggccgctacgaaggtttgcagtcgatcccggtcggc
aagtccccgcacgactgcgtgatgctgacctactcgggcggcgacaagctctacatcccg
gtcgaaaacctcgacgtcctctcgcgctacggcagcgagagcgaaggcgccgtgctcgac
aagctgggcggcgaggcatggcagaagcgccgcgccaagctgaaggaacgcatccgcgag
atcgccggcgaactgatgaagaccgctgccgagcgcgccctgcgcgaagcgcccgcgctg
gtggctgaggaatccagcttcaaccagttcatcgaccgcttcccctggcaggaaaccgag
gaccaggaagccgccatcggcgatacgctggaagacctcgccagcggccgcccgatggac
cgcctcgtctgcggcgacgtcggtttcggcaagaccgaagtggccctgcgcgctgccttc
gtggctgccatggcgggccagcaggtagccgtcgtcgcgcccaccacccttctcgcgcgc
cagcactattccggtttcgcggaccgcttcgccggcttcccgctcaacgtcggccgcctc
tcgcgcctcgtccccgaaaaggaggccaaggccacccgcgaggggctggccgatggcacc
atggacgtcgtctgcggcactcatgcgatcctgtccaagacggtcagcttcaaacgtctc
ggcctcgtcatcgtcgatgaggagcagcgtttcggcgtcaaccacaaggagaagctgaag
cagctgcgggccgacgtccacgtcctgacgctcaccgccacgcccatcccgcgcacgttg
caaatggcgatgtcgggcctgcgcgaactctccaccatccagaccccgccggtcgaccgc
ctcgcggtaagaacctacgtgatggaatgggacgaaatggtgatgcgcgaggctttgctg
cgcgaacatcaccgcggcggccagagcttcatcgtcgtcccccgcatcgccgacatggcc
gaggtggaggactggctgagcaagaacgtccccgaagtgaaagtcatctctgcccacggc
cagatgtcggcgggcgacgtggaagaacgcatgagcgccttctacgagggcaagtacgag
gttttgctgtccaccacgatcgtggaatcgggcatcgacatcccgcgcgccaacaccatc
atcatccaccgcgccgaccgcttcggcctcgcccagctttaccagctgcgcggccgcgtc
gggcgttcgaaactacgcgcctatgcctacctgaccacgccgcccggtcaggctttgagc
gaagtttccgaaaagcgcctcaaggtactgggcgacctcgattcgttgggcgcaggtttc
cagctggccagccacgatctcgacatccgcggcgccggtaacctccttggcgacgaacaa
tcgggccacatccgcgaagtcggcttcgaactttaccagtcgatgctggaagacgcgatc
ctcgccgcccgcgccggcggcgtcgggctggagaaggacacctcgggcctgtccccgcag
atcacggtcgaagcgccgatcatgatcccggaagaatacgtccccgacctcgcggtgcgc
atggcgctttaccgccgcctaaacgacgcggattcgcgcgccgagatcgaatcgctctcg
gccgaaatgatcgaccgcttcggccccctgccccagccgaccgcgaacctcgtccagctc
atccagatcaagcggcaggcgatcgaggcccacattgccaagatcgacgtcggcccgcgc
ggcacgctggtcagcttccacaacgacagcttccccaacccggaaggcctcatcgcctac
gcagacaggctgcaaggcgcgatcaagctgcgcccggacaacaagctggtattgcagcgc
gcgtggggcgatccaaagagccggctcaacggtctgctgcagttgaccaagggtctcagc
gcggttgcgcgcaaggggtaa
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