Novosphingobium sp. P6W: TQ38_007900
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Entry
TQ38_007900 CDS
T05550
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nov
Novosphingobium sp. P6W
Pathway
nov03410
Base excision repair
nov03430
Mismatch repair
nov03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TQ38_007900 (recJ)
03430 Mismatch repair
TQ38_007900 (recJ)
03440 Homologous recombination
TQ38_007900 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nov03400
]
TQ38_007900 (recJ)
DNA repair and recombination proteins [BR:
nov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TQ38_007900 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TQ38_007900 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TQ38_007900 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
PfkB
Motif
Other DBs
NCBI-ProteinID:
AXB76437
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Position
1:complement(1633855..1635642)
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AA seq
595 aa
AA seq
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MESRSASVFGIDRSLTGKAWRWRGGNMDLSDGPGGLEDDIVTQLLLSRGVARDDLARHRN
PSLRAFLPDPSAFRDMDAAADRLTQAVMAGETVTVYGDYDVDGATSAALLLLLLRDLGQE
GRYYIPDRLLEGYGPSGEALVRIAGEGSSLIVTVDCGAMAFEALEMAHQAGVDVIVVDHH
KCSPQLPRAAALVNPNRLDEDELAASHGHLAAVGVAFLLAVATVRTLRGRGFFANRREPD
LFALLDLVALGTVADVAALHGLNRAFVAQGLKVMAKRDNIGMSALIDASRLGRAPSCSDL
GFALGPRINAGGRVGESTLGVRLLTSTNPDEAKDIAAQLSRLNDERRGIEQAVQEMAEMQ
LDRQHNRSVIVVSGEGWHPGVIGIVAGRIKEKTGKPTLVIAMGADEAGNGKGSGRSISGV
DLGAAIIAAREMDLLVAGGGHAMAAGLTIAPGKLDALSDWLDERLAADVSRASSSQSMLL
DLALNPGGLTPSLIETLESAGPYGMGWPGPRVAVGPVRIMKADVVGTDHLRLIVSGPDGG
RFKAMAFRSAESEMGQALLHASQGRRLWLAGRAKIDDWGSRPQAELHLDDAAFCD
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggaatcacgatctgcttccgtttttggaatcgatcgctcgctgacaggcaaggcctgg
cgctggcgcggtggcaacatggacctgagcgacggtcccggcgggttagaggacgacatc
gtcacccagcttctgctgtcgcgcggagttgcgcgtgacgatctggcgcgtcatcgcaat
ccttccttgcgtgcctttttgcccgacccgtccgcttttcgcgacatggacgccgccgcc
gaccgccttacccaggcggtgatggccggcgagacagtcaccgtatacggcgactacgac
gtcgacggggccaccagcgccgccctgctcctgctgctcctgcgcgacctgggacaggaa
ggacgctactacatccccgaccgcctcctcgaaggctacggcccctccggcgaggcgctg
gtgcgcatcgcgggcgaagggtcgagcctcatcgtcaccgtagattgcggcgcgatggcg
ttcgaggcgctggagatggctcaccaggccggcgtcgacgtgatcgtggtcgaccatcac
aagtgctcaccccagctcccccgcgccgccgcgctggtcaatcccaaccgtctcgacgag
gacgaactggcggcatcccacggccaccttgcggcagtcggcgtcgccttccttctcgcg
gtggcgaccgtgcgcaccctgcgcgggcgcggctttttcgcaaaccgccgcgagccggac
ctgttcgccctgctggacctggtcgcgctgggcacggtggcagatgtcgccgcgctgcac
ggcctcaaccgcgcgttcgtggcgcagggcctcaaggtcatggcaaagcgcgacaatatc
ggcatgtcggccctgatcgatgccagccggctgggccgcgcgccttcttgcagcgatctg
ggctttgcgctggggccgcgcatcaatgccggtgggcgcgtcggcgaatcgactcttggc
gtgcgacttctgacttccacaaaccccgacgaggccaaggacatcgccgcccagctttcc
cgcctcaacgatgagcgccggggcatcgagcaggcggtgcaggagatggccgagatgcag
ctggaccgccagcacaaccgctcggtgatcgtcgtgtccggcgaaggctggcatcccggc
gtgatcggcatcgtggcgggccgcatcaaggaaaagaccggcaagcccactctcgttatc
gcgatgggcgcggacgaggccggtaacggcaagggatcgggccgctcgatctcgggcgtg
gacctgggcgccgcgatcatcgccgcgcgcgaaatggacctgctggtggccggcggcggc
catgccatggccgccggcctgacgatcgctcccggaaagctcgatgccctctccgactgg
ctggacgagcggctcgccgcagatgtctctcgcgccagtagcagccagtctatgctgctc
gatcttgcgctcaatcccggcggcctgaccccgtcgctgatcgaaacgctggaaagcgcc
ggcccctacggcatgggctggcccggcccgcgcgttgcggtcggccctgtgcgcatcatg
aaggccgacgtggtgggaaccgaccacttgcggctgatcgtctccggcccggacggcggc
cgtttcaaggcgatggcgttccgttcagcggaaagcgagatggggcaggccctgctccat
gcctcgcaagggcgccgtctatggctggcaggacgcgccaagatcgacgattggggaagc
cgccctcaggcggagttgcacctcgacgacgctgctttctgcgattga
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