Novosphingobium sp. P6W: TQ38_011650
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Entry
TQ38_011650 CDS
T05550
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nov
Novosphingobium sp. P6W
Pathway
nov03030
DNA replication
nov03430
Mismatch repair
nov03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TQ38_011650
03430 Mismatch repair
TQ38_011650
03440 Homologous recombination
TQ38_011650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nov03032
]
TQ38_011650
03400 DNA repair and recombination proteins [BR:
nov03400
]
TQ38_011650
Enzymes [BR:
nov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TQ38_011650
DNA replication proteins [BR:
nov03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TQ38_011650
DNA repair and recombination proteins [BR:
nov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TQ38_011650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AXB77066
UniProt:
A0A2Z5EBT6
LinkDB
All DBs
Position
1:complement(2413678..2417280)
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AA seq
1200 aa
AA seq
DB search
MAHSPFVPLRIFSSFTMLDGAIEPKAIAKLAKERKFPAAAICDRNGLYGAPIFAGAAKSA
GVQPIVGTFLAVARPGAAVQGQDFPIDWLALLAQNEAGWLNLCHHVSRAHLARPLELDPH
VQLESLRGYTDGLICLSGGNEGALARLFARGKYDAAESYCDTLQSLFGDRLYIEITRTGE
PEEDESEEELIALAYSRDIPLVASNPAQYPEKTFHAAHDALLCIANSTQIDAEDRPRSSS
ERWVKPMPVMQELFADLPEALANTLVVAQRCAYAPPKRKPLLPSLAGDREGEARMLADDS
RLGLASRLAPYWPDVTVDELDEAMALKGDDRRAAYEALREKGVTEDFLEYADRLDFEVGI
IVGMGFPGYFLIVADFIKWSNENGIPVGPGRGSGAGSLVAWALTITGLDPLKLGLLFERF
LNPERVSMPDFDIDFCETRRGEVIRYVQAKYGEDHVAQIITFGKMKARAVLRDCGRILQM
GYGKVDSLCKMVPNHPTDPWTLTETINGRKQHGVTKDGPVPEFRREYDNDAEVRRLVDLA
VQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKYVEDTGLVKFDFLG
LKTLSVLHKAGELLQRRGITINLATLGWDDPAVYELLKRGDTVGVFQLESEGMRRTLSAV
KPTNFGDIIALVSLYRPGPMDNIPLFGQRKNGLAAIEYPHEKLSVILGETYGIFVYQEQV
MQAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRMRFVEGCKRESDIEAAKANELFDLID
KFAGYGFNKSHAAAYALLAYHTAWFKAHYPHEFYAAAMCFDMHQSEKLAIFVDDARRNGI
ELAPPDINRSEAEFIVEETAESHAVRYALAGIRNVGEKAMDAIVAEREANGPFVSLDDVF
RRAPAGSMNRRQLESLGAAGGFDALEPNRAKVLANADTLLAEADRSSRERNSTQAALFGG
DDHAEQGLRLVDAEPWSRIEQMAKERENFGFYFAAHPVEQYRVVATGNGARTYSSLMAGG
GGGGRTGAVMAAMVESVQRRKTKRGKDFVMADFSDQSGNFSASCFEESLVENFVKWAKEG
TCILLQVELDSPSVDEPPRVTIRGGRPLAEVKADARMLLKLDIDRVEAVQELALLMRPGP
KGSGEVIATLHLGNGREQKVRLGRDFALDGDFAEQLQSVAGISGIELTARRGPEKVPMAA
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggctcattctcccttcgtaccgcttcgcatcttctccagcttcaccatgctggacggc
gcgatcgagccgaaggcgatcgccaagttggccaaggagcgcaagttccccgccgccgcg
atctgcgatcgtaacggcctttacggcgccccgatcttcgcaggggcagccaagagcgcg
ggcgtgcagcccatcgtcggcaccttcctcgccgtggcccggcccggtgcggcggtgcaa
ggccaggatttcccgatcgactggctggccctgcttgcccagaacgaggcgggatggctc
aacctgtgccaccatgtcagccgcgcccaccttgcccgcccgctggagcttgacccccac
gtccagctcgaatcgctgcggggctacaccgacgggttgatttgcctgtccggcggcaac
gaaggcgcgctggcgcggcttttcgcgcgcggcaaatacgacgctgcggaaagctactgc
gacacgctgcaatcgctgttcggcgaccgtctctacatcgagatcacccgcacgggtgag
cctgaggaggacgagagcgaggaggaactgatcgcgctcgcctacagccgcgatatcccg
ctggtcgcctccaacccggcgcagtacccggaaaagaccttccacgccgcgcatgacgcg
ctgctgtgcattgccaactccacccagatcgacgccgaagatcgcccgcgctcctcgtcc
gagcgctgggtaaagccgatgccggtcatgcaggaactgttcgcggacctgcccgaggcg
ctggccaataccctcgtcgttgcgcagcgctgcgcttatgcaccgcccaagcgcaaaccg
ctgctgcccagcctcgccggtgaccgcgaaggcgaggcgcggatgctcgccgacgattcg
cgccttggccttgcgtcgcgtctcgcgccgtactggccggatgtcaccgtcgacgaactc
gacgaggccatggccctcaagggcgacgaccgccgcgccgcttacgaagccttgcgcgaa
aaaggcgtcaccgaagacttcctcgaatacgccgaccgcctcgatttcgaggttggcatc
atcgtcggcatgggctttcccggctacttcctgatcgttgccgacttcatcaagtggtcg
aacgaaaatggcattcccgtgggtccggggcgtggttcgggcgctggttcgctggtggca
tgggccttgaccatcaccggcctcgacccgctcaagctgggcctgctgttcgaacgcttc
ctgaacccggaacgcgtgtcgatgcctgacttcgacatcgacttctgcgaaacccggcgc
ggcgaagtcatccgctacgtccaggccaagtacggcgaggaccacgtcgcccagatcatc
actttcggtaagatgaaggcccgcgcggttttgcgcgattgcgggcgcatcctgcagatg
ggctacggcaaggtcgacagcttgtgcaagatggtgcccaaccatccgaccgacccttgg
acgctgaccgagacgatcaacgggcgaaagcagcacggcgtcaccaaggacggcccggtg
ccggaattccgccgcgaatatgataacgacgccgaagtgcggcggctggtcgatctggcg
gtgcagttggaaggcctgccgcgcaactcctccacccacgcggcgggcgtcgtcatcggc
gaccgtccgctggcgcaattggtgccgctctaccgcgatccgcgttccgacatgccggtg
acccagttcgacatgaaatatgtcgaggacacgggcctcgtcaaattcgacttcctcggc
ctcaagacgctttcggtgctgcacaaggcgggcgaactgctgcagcggcgcgggatcacc
atcaacctggcgaccctgggctgggacgatcccgcggtgtacgaactgctcaagcgcggt
gacaccgtgggcgtgttccagctggaatcggaaggcatgcgccgcacgctgtcagccgtg
aagccgaccaacttcggcgacatcatcgcgctcgtctcgctctaccgtcccggtccgatg
gacaacatcccgctgttcggacagcgcaagaacggcctcgccgcgatcgagtatccgcac
gaaaagctctcggtgatcctgggcgagacgtacgggattttcgtttatcaggaacaggtc
atgcaggccgcgcagatcctggccggctactcgctgggcgacgccgaccttctgcgccgc
gccatgggcaagaaggtccaggccgaaatggacgcccagcgcatgcgcttcgtcgaaggc
tgcaagcgggaatccgacatcgaggcggccaaggccaacgaactgttcgacttgatcgac
aagttcgccggctacggcttcaacaagtcgcacgccgccgcctacgcgctgctcgcttat
cacaccgcctggttcaaggcgcactatccgcacgaattctacgccgcggccatgtgcttc
gacatgcaccagtcggaaaagctggcgatcttcgtcgacgatgcgcgccgcaacggcatc
gaactggccccgcccgacatcaaccgctcggaagccgaattcatcgtcgaggaaaccgcc
gaaagccacgcggtgcgctatgccctggcaggcatccgcaacgtcggcgaaaaggcgatg
gacgccatcgtcgcagagcgtgaagccaatggccccttcgtcagcctggatgatgtgttc
cgccgcgcacctgccggatcgatgaaccgccgccagcttgaaagcctcggcgcggcgggc
ggtttcgatgcgctggagccgaaccgggccaaggtcctcgccaacgcggacaccctgctg
gcggaggcggaccgctcctcgcgcgaacgcaattccacgcaggccgcgctgttcggcggc
gatgaccatgccgagcagggcctgcgcctcgtcgacgcggaaccgtggagccgcatcgaa
cagatggcgaaggagcgtgagaatttcggcttctatttcgccgcccacccggtcgagcag
taccgcgtggtcgccaccggcaacggcgcgcggacgtactccagcctgatggcgggcggc
ggcgggggcggacgtaccggcgcggtcatggccgcgatggtggagagcgtgcagaggcgc
aagaccaagcgcggcaaggacttcgtcatggccgacttctccgaccagtcgggcaatttc
tctgcctcgtgctttgaggaaagcctggtcgagaacttcgtgaagtgggccaaggaaggc
acctgcatcctgcttcaggtcgaactggattcgcccagcgtggacgagcctccgcgcgtt
accattcgcggcgggcgtcctctggccgaagtgaaggcggatgcgcgcatgttgctgaag
ctggatatcgatcgggtagaggcggtgcaggaacttgccctgctgatgcgccccggcccc
aagggcagcggcgaggtgatcgccaccctgcatttgggcaatggccgcgagcagaaggtg
cgcctcggccgcgacttcgcgctggacggcgactttgccgagcaattgcagagcgtggcc
ggcatttcgggcatcgaactgaccgcgcggcgagggccggaaaaggtgccgatggcggcc
tga
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