Novosphingobium sp. P6W: TQ38_013405
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Entry
TQ38_013405 CDS
T05550
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
nov
Novosphingobium sp. P6W
Pathway
nov03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nov00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TQ38_013405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nov03021
]
TQ38_013405
03400 DNA repair and recombination proteins [BR:
nov03400
]
TQ38_013405
Enzymes [BR:
nov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TQ38_013405
Transcription machinery [BR:
nov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TQ38_013405
DNA repair and recombination proteins [BR:
nov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TQ38_013405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AXB77367
LinkDB
All DBs
Position
1:complement(2800723..2801790)
Genome browser
AA seq
355 aa
AA seq
DB search
MTVNIKNWQELKKPNSLEIKPGPDPKLKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMQGEGPKRLQLSATGPAAVKAGDI
AVSGDIEVMNKDLVICHLDEGATLNMELTADTGKGYVPAVSNRPVDAPIGLIPVDSLYSP
VRQVSYKVDNARIGQELDFDKLNLTVETDGTVTPEDAVAYAARILQDQLALFVHFEDIAP
VGQSPMIGMAAGGTSASEESDTNQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQK
TEAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatcaagaactggcaggaactcaagaagccgaacagccttgagatcaag
ccgggaccagaccccaagctgaaggcgacgttcgttgccgaacctctcgagcgcggtttc
ggcctgacgctcggcaacgcgctgcgccgcgtgctgctctcctcgctgcagggcgccgcg
atcacctcgatcaagatcgagaacgtgcttcacgaattctcgtcgctcgccggcgtgcgc
gaagacgtcacggacatcgtcctcaacgtcaagcagatcgcgctcaagatgcagggcgaa
ggccccaagcgtctccagctctccgccaccggccctgccgcggtgaaggctggcgatatc
gccgtttcgggtgacatcgaggtcatgaacaaggacctcgtgatctgccacctcgacgag
ggcgcgacgctgaacatggaactgaccgccgacaccggtaagggttatgtccccgccgtg
tcgaaccgtccagtcgacgcgccgatcggtcttatcccggtcgactcgctctactcgccg
gtgcgtcaggtcagctacaaggtcgacaatgcccgcatcgggcaggaactcgactttgac
aagctgaacctcacggtcgagaccgacggcaccgtcaccccggaagacgccgtggcttat
gccgcgcgcatcctccaggaccagttggcgctgttcgtccacttcgaggacattgccccc
gtcggccagtcgccgatgatcggcatggccgctggtggtacttcggcttcggaagagagc
gacaccaaccagctcaaccgctaccttctcaagaaggtggacgagttggaactgtcggtc
cgttcggcaaactgcctcaagaacgacaacatcatctacatcggcgatctggtccagaag
accgaagccgagatgctgcgtacgccgaatttcggccgcaagtcgctcaacgagatcaag
gaagttctctcctcgatgggtctgcgccttggcatggacatcccgggctggccgcccgag
aacatcgaagagatggccaagaagctcgagcaagagctgctgggttaa
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