Novosphingobium sp. BL-52-GroH: ACFFDA_13530
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Entry
ACFFDA_13530 CDS
T11269
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
novb Novosphingobium sp. BL-52-GroH
Pathway
novb00220
Arginine biosynthesis
novb00240
Pyrimidine metabolism
novb00250
Alanine, aspartate and glutamate metabolism
novb01100
Metabolic pathways
novb01110
Biosynthesis of secondary metabolites
novb01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
ACFFDA_13530 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
ACFFDA_13530 (carB)
00220 Arginine biosynthesis
ACFFDA_13530 (carB)
Enzymes [BR:
novb01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
ACFFDA_13530 (carB)
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
Dala_Dala_lig_C
ATP-grasp
ATP-grasp_3
ATPgrasp_Ter
ATP-grasp_4
RimK
ATP-grasp_5
CoA_binding_2
ATP-grasp_2
MucBP_2
GSH-S_ATP
Motif
Other DBs
NCBI-ProteinID:
XKH13756
LinkDB
All DBs
Position
1:187106..190429
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AA seq
1107 aa
AA seq
DB search
MPKRTDISSILVIGAGPIIIGQACEFDYSGTQAIKALKEEGYRVVLVNSNPATIMTDPDM
ADATYVEPITPEIVARIIEKERPDAVLPTMGGQTALNCALALFNDGTLEKYGVQMIGADA
DAIDKAEDRQRFREAMDKIGLSSARSGVAHTLDEAFKVLETTGLPSIIRPSFTMGGTGGG
IAYNKAEFEAIVRSGLDASPTTEVLIEESLLGWKEYEMEVVRDRHDNCIIICSIENVDPM
GVHTGNSITVAPALTLTDKEYQIMRTASIEVLREIGVETGGSNVQFAVNPKDGRLIVIEM
NPRVSRSSALASKATGFPIARVAAKLAVGYTLDEIMNEITGATPAAFEPTIDYVVTKIPR
FAFEKFKGAKNDLTTAMKSVGEVMAIGRNFKESMQKALRGLETGLDGFNRVVALEGAGRD
VITAALSKATPERILNAAQAFREGFTVEEIHAITHYDRWFLRHIEEIIAEEAKIMKDGLP
IDAAGLRRLKAMGFSDKRLATLAVRSVGVAGGLGETQAKRSGLLHDALRAMAGATSEKEV
RQLRRKLGVVPVFKRIDSCAAEFEAITPYMYSTYEAPFFGEPEDEAAPSDRRKVVILGGG
PNRIGQGIEFDYCCVHACFALSEAGYETIMVNCNPETVSTDYDTSDRLYFEPLTAEDVLE
ILRVEQSKGELVGVIVQFGGQTPLKLAQALEDEGIPILGTSPDAIDLAEDRERFSALVDK
LGLKQPANGIARSRDEAVNVANRIGYPVLMRPSYVLGGRAMEIVDSEQQLDDYITTAVQV
SGDSPVLIDQYLRDAIECDVDALCDGEQVVVAGVMQHIEEAGIHSGDSACTLPPYSLPPE
IIAEMERQAEALAFGLSVRGLMNIQFAVKDGEVYLIEVNPRASRTVPFVAKALGQPVAKI
ASRVMAGEMLSTFPPFKRDLPYMAVKEAVFPFARFPGVDPVLSPEMKSTGEVMGIDADFP
TAFAKAQLGAGMKLPTEGTVFVSVKNSDKPMILPAIRTLIDQGFRVIATSGTQKYLAEAG
LPVELVNKVAEGRPHIVDKIVDGEIALIFNTTEGWQSLKDSTSIRASALTGKVSIFTTAA
ASVAASEAIATIRGSQLEVRSLQDYYS
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcgtaccgacatctcctccatcctcgtcatcggcgccggcccgatcatcatc
ggccaggcctgcgaattcgactattcggggacccaggcgatcaaggcgctgaaggaggaa
ggctaccgcgtcgtcctggtcaattccaatccggcgacgatcatgaccgacccggacatg
gccgacgcgacgtatgtcgagccgatcacgcccgagatcgtcgcccgcatcatcgagaag
gagcgccccgacgcggtgctcccgacgatgggcgggcagacggcgctgaactgcgcgctg
gcgctgttcaacgacggcacgctggagaagtacggcgtgcagatgatcggtgccgacgcc
gatgccatcgacaaggccgaggaccgccagcgcttccgcgaggcgatggacaagatcggc
ctgtcctcggcgcgctcgggcgtcgcccatacgctcgacgaggcgttcaaggtgctggag
actaccggcctgccctcgatcatccgacccagcttcaccatgggcggcacgggcggcggc
atcgcctacaacaaggccgaattcgaggcgatcgtgcgctcgggcctcgacgcctcgccc
accaccgaggtcctcatcgaggaatcgctgctcggctggaaagagtacgagatggaagtc
gtgcgcgatcgccacgacaactgcatcatcatctgctcgatcgagaacgtcgacccgatg
ggcgtccatacgggcaattcgatcaccgtcgccccggcgctgacgctgaccgacaaggaa
taccagatcatgcgtaccgcctcgatcgaggtgctgcgcgagatcggcgtcgagaccggc
ggttcgaacgtccagttcgcggtgaaccccaaggacggccgcctgatcgtcatcgagatg
aacccgcgcgtctcgcgctcgtcggcgctggcgtccaaggccaccggcttcccgatcgcg
cgcgtcgccgccaagctggcggtgggctacacgctcgacgagatcatgaacgagatcacc
ggggccaccccggcggcgttcgaaccgaccatcgactacgtcgtcaccaagatcccgcgc
ttcgccttcgagaagttcaagggcgccaagaacgacctgaccaccgcgatgaagtcggtc
ggcgaagtcatggcgatcggccgcaacttcaaggaatcgatgcagaaggcgctgcgcggt
ctggagaccgggctcgacggcttcaatcgcgtcgtggcgctcgaaggggcagggcgcgac
gtcatcaccgcggcgctctccaaggcgaccccggagcgcatcctcaacgcggcgcaggcc
ttccgcgaaggcttcaccgtggaggaaatccacgcgatcacccactacgacaggtggttc
ctgcgccacatcgaggagatcatcgccgaggaagcgaagatcatgaaggacggcttgccg
atcgacgcggccggcctgcgccgcctcaaggccatgggcttctccgacaagcgcctcgcc
accctcgcggtccgttcggtcggcgtcgcgggcggcctgggcgaaacccaggccaagcgc
tccggcctgctgcacgacgccctgcgcgccatggccggcgccaccagcgagaaggaagtg
cgccagcttcgccgcaagctgggcgtcgtccccgtgttcaagcgcatcgatagctgcgcc
gccgagttcgaggcgatcacgccctacatgtactcgacttacgaggccccgttcttcggc
gagcccgaggacgaggcagcgccttccgatcgccgcaaggtcgtgatcctgggcggtggt
cccaaccgcatcggccagggcatcgagttcgactactgctgcgtccacgcctgcttcgcg
ctgtccgaggccggctacgagacgatcatggtcaactgcaatcccgagaccgtctcgacc
gactacgacacttcggaccgtctctacttcgaaccgctgaccgccgaggacgtgctggaa
atcctgcgcgtcgagcagtcgaagggcgaactcgtcggcgtcatcgtccagttcggcggg
caaactccgctcaagctggcgcaggcgctggaagacgagggcatcccgatcctgggcacc
tcgcccgacgcgatcgacctggccgaggaccgcgagcggttctccgcgctggtcgacaag
ctgggcctcaagcagcccgccaacggcatcgcccgcagccgcgacgaggcggtgaacgtc
gccaaccgaatcggctatccggtgctgatgcggcccagctacgtgctgggcggccgcgcg
atggagatcgtcgatagcgaacagcagctcgacgactacatcaccaccgccgtgcaggtc
tcgggcgacagtccggtgctgatcgaccagtatctgcgcgacgcgatcgagtgcgacgtc
gacgccctgtgcgacggcgagcaggtcgtcgtcgccggcgtcatgcagcacatcgaggaa
gcgggcatccactcgggggacagcgcctgcaccctgccgccctacagcctaccgcccgag
atcatcgccgagatggaacgccaggcggaagctctcgcgttcggcctcagcgtgcgcggg
ctgatgaacatccagttcgcggtgaaggacggcgaggtgtacctcatcgaggtcaacccg
cgcgcctcgcgcacggtgcccttcgtcgccaaggcgctcggccagccggtcgccaagatc
gccagccgggtcatggcgggcgagatgctgtcgaccttcccgccgttcaagcgcgacctg
ccgtacatggcggtcaaggaagcggtgttccccttcgcgcgcttcccgggcgtcgatccg
gtgctcagccccgagatgaagtccaccggcgaagtcatggggatcgatgcagatttcccg
accgccttcgccaaggcgcagctcggcgccggcatgaagctgccgaccgaaggcaccgtc
ttcgtctcggtgaagaacagcgacaagccgatgatcctgcccgcgatccgcaccctgatc
gatcagggcttccgggtgatcgcaacgtcgggcacgcagaagtacctcgccgaggccggc
ctgccggtcgagctggtgaacaaggtggccgaagggcgtccgcacatcgtcgacaagatc
gtcgacggcgagatcgcgctgatcttcaacaccaccgaaggctggcagagcctcaaggac
tcgacctcgatccgcgcttcggcgctcacgggcaaggtttcgatctttaccacggccgct
gccagcgtcgccgcgagcgaggcgattgcgacgattcgtggcagccaacttgaagtgcgt
tcgttgcaagactactatagctga
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