Novosphingobium sp. BL-52-GroH: ACFFDA_16215
Help
Entry
ACFFDA_16215 CDS
T11269
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
novb Novosphingobium sp. BL-52-GroH
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
novb03019
]
ACFFDA_16215 (hrpB)
Enzymes [BR:
novb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACFFDA_16215 (hrpB)
Messenger RNA biogenesis [BR:
novb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACFFDA_16215 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
CON_HrpB
AAA_30
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
XKH14253
LinkDB
All DBs
Position
1:complement(759159..761639)
Genome browser
AA seq
826 aa
AA seq
DB search
MTTLPIHAVLPDLLGALRENTGAVLIAPPGAGKTTALAPALLGEDWCTGTVILLSPRRVA
ARAAAERMAEGLGEQAGGTIGYLTRLDVKRSAKTRVLVMTEAIFVATILSDPELSGVSAV
LFDEAHERHLDSDLGLALAVESRAVLREDLRIVVMSATIDGTRFARLLGGEGEGGTPVIE
SAGKAWPLAVRWLGHAPERRIEEAMATALLTAWREETGDILAFLPGVREIERVAESLAQK
LPSALVLPLHGQCEPAAQRAAIRRDAEGRRRIVLATAIAETSLTLDGVSVVVDAGLSRRA
EFDKGAGVTRLVTHRASRASAAQRAGRAARQGPGTAYRLWEEAAHAGRPEFDPPEMLTSD
LAPLTLTLAQWGAGDPAAMAWLDAPPVPALDAARKGLAALGALDGEGRITAFGRKVASLP
MDPAQAAMILRASELGAGDVAARLALLLQERGLGGRSDDLVQRLSRWDADRSPRAQASRK
LAQGWARRAQGMVSAPSAAEDVPPGILLALGRPDMLARRRDGSGETWLSAGGRGYVLDPA
SPLASRDWIVIGDAQGQAKGARILSGASLETAEVEAWLADMIERRTVLRWNDDDARVEAR
LERRLGAITLATGPDPSPDPDAIRAFLIARIRAKGLSLVPLGKGAQALLRRARYAGIAAL
SDEALLADLEEWLGPLLTRRLDALDGAALSQALRDRLGWDDQQALERLAPPNFRSPAGTT
HPIDYEDEGGPSVEVRVQALFGLDRHPSFGQPPQPLLLKLTSPPGRPIQTTGDLPGFWRG
SWRDVQRDMKGRYPRHRWPDQPWTEDPSLKTRNAFERTKGDGGRKE
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
gtgaccacgcttcccatccatgccgtcctgccggacctgctcggcgccctgcgcgagaac
accggcgcggtgctgatcgcgccgccgggcgcgggcaagaccactgcgctcgccccggcg
ctgctgggcgaggactggtgcaccggcaccgtcatcctgctctccccccgccgcgtcgcc
gcgcgcgccgccgccgagcgcatggccgaagggctgggcgagcaggccggcgggacgatc
ggctatctcacccgcctcgacgtcaagcgctcggcgaagacgcgggtgctggtgatgacc
gaggcgatcttcgtggcgacgatcctctccgaccccgagctttccggggtctccgcggtt
ttgttcgacgaagcgcacgaacgccatctcgacagcgacctcggccttgcgctggcggtc
gagagccgggccgtcctgcgcgaggacctgcggatcgtggtgatgtcggcgaccatcgac
ggcacccgcttcgcccgcctgctggggggcgagggagaaggaggcacgccggtgatcgaa
agcgccggcaaggcctggccgctcgccgtccgctggctcggccacgcgcccgagcggcgg
atcgaggaggcgatggccaccgcgctcctcaccgcctggcgcgaggagacgggcgatatc
ctcgccttccttcccggcgtgcgcgagatcgagcgggtggcggaaagccttgcgcagaag
ctgccctcggcgctggtcctgccgctccacggccagtgcgagccggcggcccagcgcgcg
gcgatccggcgcgatgcggaaggccgccgccgcatcgttctggcgaccgccatcgccgag
acctcgctgacgctcgacggcgtctcggtcgtcgtcgacgcgggcctttcccgccgcgcc
gagttcgacaagggggcaggcgtcacgcgcctcgtcacccaccgcgccagccgcgcctcg
gccgcccagcgcgccggccgcgccgcgcgccaggggccgggcacggcctatcgcctgtgg
gaagaggccgcgcacgccggccggcccgagttcgacccgcccgaaatgctcaccagcgac
ctcgcgcccctgaccctgacgctggcgcagtggggagcgggcgatcccgccgcgatggcg
tggctcgatgcgccgccggtcccggcgctcgacgcggcgcgcaagggcctcgccgccctg
ggtgcgctcgacggggaggggcggatcaccgcgttcggccgcaaggtcgccagcctgccg
atggaccccgcgcaggcggcgatgatcctgcgcgcgagcgaactgggcgccggcgacgtc
gccgcgcgtcttgcgctgctgctccaggaacgcggcctcggtgggcgcagcgacgacctc
gtccagcgcctctcgcgctgggacgcggaccggtcgccgcgcgcgcaggcctcgcgcaag
ctggcccagggctgggcgcggcgggcgcaggggatggtgtcggccccaagcgcggccgaa
gacgtgccgcccggcatcctgctcgcgctcggccgcccggacatgctggcgcgccgccgc
gacggttcgggcgagacctggctgagcgccgggggcaggggctacgtgctcgaccccgcc
tcaccgctcgcctcgcgcgactggatcgtgatcggcgatgcgcaagggcaggccaagggc
gcgcgcatcctctcgggcgcctcgctggagaccgccgaagtcgaggcctggctggccgac
atgatcgagcggcgcacggtgctgcgctggaacgacgacgatgcccgcgtcgaggcgcgg
ctcgaacgccggctcggcgcgatcacgctcgccaccgggcccgatccgtcgcccgatccc
gacgcgatccgcgccttcctcatcgctcgcatccgcgcgaagggcctgtcgctggtgccg
ctcggcaagggcgcacaggcgctgctgcgccgggcgcgctatgccgggatcgccgcgctt
tcggacgaggcgctgctggcggacctcgaggagtggctgggcccgctgctgacccgccgc
ctggatgcgctcgacggcgcggccctgtcgcaggccttgcgcgatcgcctcggctgggac
gaccagcaggcgctcgaacgcctggctccgcccaatttccgcagccccgccgggaccacc
catccgatcgactacgaggacgagggcggcccttccgtcgaagtgcgggtgcaggccttg
ttcgggctcgaccgccaccccagcttcggccagccgccgcagcccctgctcctcaagctg
acctcgcctcccggccgcccgatccagaccaccggcgacctgccgggcttctggcgcggc
tcgtggcgcgacgtgcagcgcgacatgaagggccgctacccgcgccaccgctggccggac
cagccctggaccgaggaccccagcctcaagacccgcaacgcgttcgagcgcacgaaaggc
gatggcggccgcaaggaatga
DBGET
integrated database retrieval system
