Novosphingobium sp. BL-52-GroH: ACFFDA_18525
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Entry
ACFFDA_18525 CDS
T11269
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
novb Novosphingobium sp. BL-52-GroH
Pathway
novb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACFFDA_18525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
novb03021
]
ACFFDA_18525
03400 DNA repair and recombination proteins [BR:
novb03400
]
ACFFDA_18525
Enzymes [BR:
novb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACFFDA_18525
Transcription machinery [BR:
novb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACFFDA_18525
DNA repair and recombination proteins [BR:
novb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACFFDA_18525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
XKH14688
LinkDB
All DBs
Position
1:complement(1255329..1256396)
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AA seq
355 aa
AA seq
DB search
MTVNIKNWQELKKPNSLEIKPGPDPKLKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALRMQGEGPKRLQLSATGPAAVKAGDI
AVSGDIEVMNKDLVICHLDEGATLNMELTADTGKGYVPAVSNRPVDAPIGLIPVDSLYSP
VRQVSYKVDNARIGQELDFDKLNLTVETDGTVSPEDAVAYAARILQDQLALFVHFEDIAP
VGQSPMIGMAAGGTSASEESDTNQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQK
TEAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatcaagaactggcaggaactcaagaagccgaacagccttgagatcaag
ccgggaccagaccccaagctgaaggcgacgtttgtcgccgaacccctggagcgtggcttc
ggcctgacgctcggcaacgcgctgcgccgcgtgctgctctcctcgctgcagggcgccgcg
atcacctcgatcaagatcgagaacgtgcttcacgaattctcgtcgcttgccggcgtgcgc
gaagacgtcacggacatcgtcctcaacgtcaagcagatcgcgctgcgcatgcagggcgag
ggccccaagcgtctccagctctccgccaccggcccggccgcggtgaaggccggcgacatc
gccgtctcgggtgacatcgaggtcatgaacaaggacctcgtgatctgccacctcgacgag
ggcgcgacgctgaacatggaactgaccgccgacaccggcaagggctacgtccccgccgtg
tcgaaccgtcccgtcgacgcgccgatcggtctcatcccggtcgactcgctctactcgccg
gtgcgtcaggtcagctacaaggtcgacaacgcccgcatcggccaggagctggacttcgac
aagctgaacctcaccgtcgagaccgacggcacggtttccccggaagacgccgtggcttac
gccgcgcgcatcctccaggaccagcttgcgctgttcgtccacttcgaggacatcgccccc
gtcggccagtcgccgatgatcggcatggccgccggtggtacgtcggcttcggaagagagc
gacaccaaccagctcaaccgctaccttctcaagaaggtggacgagctggaactgtcggtg
cgttcggccaactgcctcaagaacgacaacatcatctacatcggcgacctggtccagaag
accgaagccgagatgctgcgcacgccgaacttcggccgcaagtcgctcaacgagatcaag
gaagttctctcctcgatgggtctgcgcctcggcatggacatcccgggctggccgcccgag
aacatcgaagagatggccaagaagctcgagcaggaactgctcggctga
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