Novosphingobium sp. BL-52-GroH: ACFFDA_18725
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Entry
ACFFDA_18725 CDS
T11269
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
novb Novosphingobium sp. BL-52-GroH
Pathway
novb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFFDA_18725 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
novb03019
]
ACFFDA_18725 (pnp)
03016 Transfer RNA biogenesis [BR:
novb03016
]
ACFFDA_18725 (pnp)
Enzymes [BR:
novb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ACFFDA_18725 (pnp)
Messenger RNA biogenesis [BR:
novb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACFFDA_18725 (pnp)
Transfer RNA biogenesis [BR:
novb03016
]
Prokaryotic type
tRNA degradation factors
ACFFDA_18725 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
NAGLU_C
Motif
Other DBs
NCBI-ProteinID:
XKH14727
LinkDB
All DBs
Position
1:complement(1289632..1291947)
Genome browser
AA seq
771 aa
AA seq
DB search
MFDVKTVSMEWGGKTLTLETGRIARQANGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVIAQVLSF
DGETEADILAMIAASAALTISGVPFMGPIGAARVGYVDGAYTLNPKQDVALKDGSLDLVV
AATGDAVMMVESEAKELTEEVMLGAVVYAHDEIKKVVNLIIDLAEQAAEEPWDVDLSDNT
ADIKAKLKKAVGKDITAAYKLTDKSARSNALNAARAKAKEAFAGETPQTQMVAIKTIKKL
EAEIVRGAILKDGKRIDGRKLDQVRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTKE
SEQMIDGLEGLSYSSFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKED
FPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLVRPVSGIAMGLILEGKDFAVLSD
ILGDEDHLGDMDFKVAGTEVGITTMQMDIKIAGITREIMGKALEQAKAGRAHILGEMTKA
LGSSRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKISSS
DTAQIEAAKKWILGIVEEAEVGKIYQGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVE
KPTDVVKEGQAVYVKVLEIDPRGKVRLSMRVVDQETGAALEDTRPPREPREGGDRGPRSG
GGDRGGDRRGPRRDGGGRGGDRGPRGGGDRGPRGGGEGGNPDHLPAFLKED
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtcaagaccgtaagcatggagtggggcggcaagaccctcactctcgaaacc
ggccgcatcgcccgccaggcgaacggcgcagtgctcgccacctacggcgaaaccgtggtg
ctgtgcgccgtcaccgccgccaagtcggtgaaggaaggccaggacttcttcccgctgacc
gtccactaccaggaaaagttctccgcagccggccgcatccccggcggcttcttcaagcgc
gagcgcggtgcgaccgaaaaggaaacgctgaccagccgcctgatcgaccgtccgatccgc
ccgctgttccccgaaggtttctacaacgaaatcaacgtcatcgcccaggtcctgagcttt
gacggcgagaccgaggccgatatcctggcgatgatcgccgcttcggccgcgctgaccatc
tcgggcgtgcccttcatgggcccgatcggcgccgcgcgcgtcggctacgtcgacggtgcg
tacacgctcaaccccaagcaggacgtcgccctcaaggacggcagcctcgatctggtcgtc
gccgccaccggcgatgccgtgatgatggtcgaatcggaagccaaggagcttaccgaagag
gtcatgctgggcgccgtcgtctacgcgcacgacgagatcaagaaggtcgtgaacctcatc
atcgacctggccgagcaggccgccgaggagccttgggacgtcgacctgtcggacaacacc
gccgacatcaaggcgaagctcaagaaggccgtcggcaaggacatcaccgcggcctacaag
ctgaccgacaagtcggcccgctcgaacgcgctcaacgcggcgcgtgccaaggccaaggaa
gccttcgccggcgagaccccgcagacgcagatggtcgccatcaagaccatcaagaagctg
gaagcggaaatcgttcgcggcgccatcctcaaggacggcaagcgcatcgacggccgcaag
ctcgaccaggtccgtccgatcgaagcgatcgtcggcttcctgccgcgcacccacggttcg
gcgctgttcacgcgcggtgagacgcagtcgatctgcaccaccacgctgggcaccaaggaa
tcggaacagatgatcgacggcctcgaaggcctgtcgtactcgtcgttcatgctgcactac
aacttcccgccctactcggtcggtgaagtcggccgcttcggcgcgccgggccgccgcgaa
gtcggccacggcaagctggcatggcgcgcgctgcacccggtgctgcccgccaaggaagac
ttcccctatacgatccgcgtgctttcggacatcaccgagtcgaacggctcgtcctcgatg
gcgaccgtctgcggcggttcgctctcgatgatggacgcgggcgtgccgctggtccgcccg
gtttcgggcatcgccatgggcctgatcctggaaggcaaggacttcgccgtcctgtccgac
atcctgggcgacgaggatcacctcggcgacatggacttcaaggtcgcgggcaccgaagtc
ggcatcaccacgatgcagatggacatcaagatcgcgggcatcacgcgcgagatcatgggc
aaggcgctcgagcaggccaaggccggccgcgcgcacatcctgggtgaaatgaccaaggct
ctgggctcctcgcgcaccgaactgtcggcgcacgccccgcgcatcgagacgatccagatc
gacaagtcgaagatccgtgacgtcatcggcaccggcggcaaggtcatccgcgagatcgtc
gccgagaccggcgccaaggtcgacatcgacgacgagggcgtcatcaagatctcgtcctcc
gacaccgcgcagatcgaggccgccaagaagtggatcctcggcatcgtggaagaggccgaa
gtcggcaagatctaccagggcaaggtcgtcaacatcgtcgacttcggcgccttcgtgaac
ttcatgggtggcaaggacggcctcgtccacgtctccgaaatgaagaacgagcgcgtggaa
aagccgaccgacgtcgtcaaggaaggccaggcggtctacgtcaaggtcctcgagatcgac
ccgcgcggcaaggttcgcctgtcgatgcgcgtcgtcgaccaggaaaccggcgcggcgctc
gaagacacccgcccgccgcgtgaaccgcgcgaaggcggcgatcgcggtccgcgcagcggt
ggcggtgatcgcggcggtgatcgtcgtggtccgcgtcgtgacggcggtggccgtggcggc
gaccgcggcccgcgcggcggcggcgaccgtggcccgcgtggcggcggcgaaggcggcaac
cccgaccacctgccggccttcctcaaggaagactga
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