Novosphingobium sp. BL-52-GroH: ACFFDA_19165
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Entry
ACFFDA_19165 CDS
T11269
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
novb Novosphingobium sp. BL-52-GroH
Pathway
novb02020
Two-component system
novb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACFFDA_19165 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACFFDA_19165 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
novb03021
]
ACFFDA_19165 (rpoN)
Transcription machinery [BR:
novb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACFFDA_19165 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
BON_like
HTH_Crp_2
HTH_3
Phage_CII
Motif
Other DBs
NCBI-ProteinID:
XKH14809
LinkDB
All DBs
Position
1:complement(1370856..1372376)
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AA seq
506 aa
AA seq
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MALGPRLDLRQSQSLVMTPQLQQAIKLLALSNLEIETFIGEALDANPLLDVGGGASADAV
EIPGDQTLDERRTTLEGSSVDQLIGEGRAADDRPLDIDATALDRDRDTGDGGLGGADDTG
WGAELRTGGPGEQGPGIDDRAALAGTLVEHLEAQVGASTRDPFVAGVARYIIGQLDEAGY
LPVGLSELAADLGIAVDEVAEGLALVHTLDPTGVGARSLSECIALQAREADRYDPLMARL
IDNLDLLARGELPRLKRMCGVDDEDFADMLGELRGYDPKPGLRFGGEPSGAVTPDVLVTP
RADGGWDIALNQATLPRLIVNRGYYVELKGDCPDKAARAWLSDKLADANWLIKALDQRQK
TILKVATELVKQQDGFFRHGVALLRPLTLRTVAEAIGMHESTVSRVTSNKFLNCPRGTYE
LKFFFSSGVGSADGEGGASAEAVKAAIRQLIDAEDAKAILSDDALVELLKAKGFELARRT
VAKYREAIGLGSSVQRRRQKALAGAR
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
gtggctctggggccacgcctggatctcaggcaaagccagtcgctggtgatgacgccgcag
ttgcagcaggcgatcaagctgctggcgctgtccaatctcgagatcgagacgttcatcggc
gaggcgctcgacgccaatcccctgctcgacgtcggcggcggtgcgtccgccgatgcggtg
gaaatcccgggcgatcagacgctcgacgagcgtcgtaccaccctggaagggtcttcggtc
gaccagctcatcggcgagggccgcgctgccgacgaccgcccactcgacatcgacgccacc
gcgctcgaccgtgaccgcgacaccggcgacggcggcctgggcggtgccgacgacaccggc
tggggtgccgagctgcgcactggcggccccggcgagcaaggtccaggcatcgacgatcga
gcggcgctcgcaggtacgctggtcgagcatctcgaggcgcaagtcggcgcttccacccgc
gatcccttcgtggccggcgtcgcgcggtacatcatcggccagctcgacgaggccggctac
ctgccggtcggcctgtcggagctggccgccgaccttggcatcgccgtagacgaggtggcg
gaagggctggcgctggtgcacacgctcgatcccacgggcgtgggcgcgcgcagcctgtcg
gaatgcatcgcgctgcaggcccgggaggcggaccgctacgatccgctgatggccaggctg
atcgacaacctcgaccttctggcgcgcggcgaactgccccggctcaagcgcatgtgcggc
gtggacgacgaggacttcgccgacatgctcggcgaactgcgcggctacgaccccaagccg
ggcctgcgcttcggcggcgagccgagcggcgcggtcacgcccgacgtgctggtcaccccg
cgcgccgacggaggctgggacatcgccctcaaccaggcgaccctgccacgcctgatcgtc
aatcgcggctattacgtcgaactgaagggcgattgtcccgacaaggccgcgcgcgcgtgg
ctttcggacaagctggccgatgccaactggctcatcaaggcgctcgaccagcggcagaag
accatcctcaaggtcgccaccgaactggtgaagcagcaggacggcttcttccgccatggc
gtcgcgctgcttcggccgctgacgctgcggacggtggcggaggcgatcggcatgcacgaa
tcgaccgtcagccgcgtcacctccaacaagttcctcaactgcccgcgcggcacgtacgag
ctgaagttcttcttcagctccggcgtcggttcggcggacggcgagggcggcgcttcggcc
gaggcggtcaaggccgcgatccgccagctgatcgatgccgaggacgccaaggcgatcctc
tcggacgacgcgctggtcgagctgctcaaggccaagggcttcgagctggcgcgccgcacc
gtcgccaagtaccgcgaggcgatcggcctgggcagttcggtgcagcgccgccgccagaag
gcccttgcgggcgcgcgctga
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