Novosphingobium sp. BL-52-GroH: ACFFDA_19335
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Entry
ACFFDA_19335 CDS
T11269
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
novb Novosphingobium sp. BL-52-GroH
Pathway
novb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACFFDA_19335 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
novb03400
]
ACFFDA_19335 (uvrB)
DNA repair and recombination proteins [BR:
novb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACFFDA_19335 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACFFDA_19335 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
Microtub_bd
DUF87
UB2H
AAA_22
AAA_16
AAA_33
SRP54
Motif
Other DBs
NCBI-ProteinID:
XKH14840
LinkDB
All DBs
Position
1:1399331..1401517
Genome browser
AA seq
728 aa
AA seq
DB search
MAELIIRRGLEEPDTTGAFVPHKPQRPVKAGASKPFRIASDYQPAGDQPTAIAELTTSAL
DGEKTQVLLGVTGSGKTFTMAKVIEELQRPALVLAPNKILAAQLYAEFRDFFPDNAVEYF
VSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRSLLERDDVIIVASVSCIYGIG
SVETYSAMIFDLETGKAQDQGEIIRKLVALQYKRNDVAFSRGNFRVRGDNLEIFPSHYED
IAWRISFFGDEIEEIAEFDPLTGKKGNVIEKVRVYANSHYVTPGPTMRQAAEAIRFELTE
RLKELEAEGRLLEAQRLEQRTNFDLEMIAATGACNGIENYSRFLTGRLPGEPPPTLFEYL
PDNALLFIDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQT
FAVSATPGTWEMEQTGGVFAEQVIRPTGLIDPPVEIRPVEDQVQDCIVECKAVAAKGYRT
LVTTLTKRMAEDLTEFMHEAGVRVRYMHSDVETLERIELIRDLRMGVYDVLIGINLLREG
LDIPECGLVCILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADRMTGSMERAIAETD
RRRARQEEYNALHGITPTTIKRRIADIVADTASRDGVIVDIEDDAHNNLVGHNLRGYIED
LEKRMRNAAADLEFEEAGRLRDEIRRLEATELGLPEAQHKAPKVGRSNEGKPGTRKTRYG
KQQKKWGK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcttatcatccgtcgcggcctcgaagaacccgatacgaccggcgccttcgtc
ccccacaagccgcagcgtcccgtcaaggcgggggccagcaagcccttccgcatcgcgtcc
gactaccagcccgccggcgaccagcccaccgcgatcgccgaactgaccacgtcagcgctc
gacggcgagaagacgcaggtgctgctgggcgtcaccggatcgggcaagaccttcacgatg
gccaaggtcatcgaggaactgcagcgccccgcgctggtgctcgcgcccaacaagatcctc
gccgcccagctctatgccgagttccgcgacttcttccccgacaacgcggtggaatatttc
gtctcgtactacgattattaccagcccgaggcctatgtgccccggtcggacacctacatc
gagaaggaaagctcggtgaacgaggcgatcgaccggatgcgccactcggccacccgctcg
ctgctggagcgcgacgacgtcatcatcgtcgcctcggtctcgtgcatctacggcatcggc
tcggtcgagacctactcggcgatgatcttcgacctcgagaccggcaaggcgcaggaccag
ggcgagatcatccgcaagctcgtcgccttgcagtacaagcgcaacgacgtcgccttctcg
cgcgggaatttccgcgtgcgcggcgacaatctcgagatcttcccctcgcactacgaggac
atcgcctggcggatcagcttcttcggcgacgagatcgaggagatcgccgagttcgatccg
ctgaccggcaagaagggtaacgtgatcgagaaagtgcgcgtctacgccaactcgcactac
gtcacccccggcccgacgatgcgccaggctgccgaggcgatccgcttcgaattgaccgag
cgcctgaaggaactggaagccgaaggccgcctgctcgaagcccagcggctcgaacagcgc
accaacttcgacctggaaatgatcgccgccaccggcgcctgcaacgggatcgagaactac
agccgcttcctgaccggccgcctccccggcgagccgccgccgaccctgttcgagtacctg
cccgacaacgcgctgctgttcatcgacgaaagccaccagacggtgccgcagatcggcgcg
atggcgcggggcgaccaccggcgcaagatcacgctcgccgaatacggcttccgcctgccg
tcgtgcatcgacaaccgccccttgcgcttcaacgaatgggacgcgatgcgcccgcagact
ttcgcggtctcggccacaccgggcacctgggagatggagcagaccggcggcgtcttcgcc
gagcaggtcatccgccccaccggcctgatcgaccccccggtggagatccgcccggtcgag
gatcaggtgcaggactgcatcgtcgagtgcaaggcggtcgccgccaagggctatcgcacc
ctagtcaccaccctcaccaagcgcatggccgaggacctgaccgagttcatgcacgaggcc
ggcgtgcgcgtgcgctacatgcactccgacgtcgagacgctggaacgcatcgaactgatc
cgcgacttgcgcatgggcgtctacgacgtgctgatcggcatcaacctgctgcgcgagggc
ctcgacattcccgaatgcggcctcgtgtgcatcctcgacgccgacaaggaagggttcctg
cgcagcgaaacctcgctgatccagaccatcggccgcgccgcgcgcaacgtcgacggcaag
gtgatcctctatgccgaccgcatgaccggatcgatggaacgggcgatcgccgaaaccgac
cgtcgccgcgcgcgtcaggaggaatacaacgcgcttcacggcatcaccccgaccacgatc
aagcgccgcatcgccgacatcgtcgccgacaccgccagccgcgacggggtgatcgtcgat
atcgaggacgatgcccacaacaacctcgtcggccacaatttgcgcggctatatcgaggac
ctcgaaaagcgcatgcgcaacgctgcggcggacctcgagttcgaggaagccgggcggctc
agagacgagatcaggcgattggaggcgaccgaactcggcctgccggaagcccagcacaag
gcgcccaaggtcggccggagcaacgagggcaagcccggcacccgcaagacacgctatggc
aagcagcagaagaagtgggggaagtag
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