Novosphingobium sp. BL-52-GroH: ACFFDA_19975
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Entry
ACFFDA_19975 CDS
T11269
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
novb Novosphingobium sp. BL-52-GroH
Pathway
novb02020
Two-component system
novb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACFFDA_19975
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACFFDA_19975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
novb03021
]
ACFFDA_19975
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
novb02035
]
ACFFDA_19975
Transcription machinery [BR:
novb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACFFDA_19975
Bacterial motility proteins [BR:
novb02035
]
Flagellar system
Flagellar assembly proteins
Stator
ACFFDA_19975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Rv2175c_wHTH
PhyR_sigma-like
UPF0122
HTH_23
Motif
Other DBs
NCBI-ProteinID:
XKH14955
LinkDB
All DBs
Position
1:complement(1540034..1540780)
Genome browser
AA seq
248 aa
AA seq
DB search
MNQMSLSTSNPFPAARRAYAGDVADRVRRFLPMVRRQAWHVHGTGRPGIELEDLVQAGLV
ALTECAQKHAGPTEDGFAAYAKMRVRGAMVDMIRRTVPMSRGANERRRHLAEKETALRGT
LGRDPLPHELARAMGIDESELATLRNASQPLRFDSIDEVYSDQNMAFATETPDSFAMLAD
EETRGAVIAAITGLPDRLKLIVQLYFVEELNLAEIAEVLQVSVPRVHQLKAQAIDKLRSG
LQGVVDVL
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagatgtccctttcgacttccaacccgttccccgccgcgcgccgcgcctatgcc
ggcgatgtcgccgaccgcgtccgccgcttcctgccgatggtccgccgccaggcctggcac
gtccacggcaccggccggccgggcatcgagctggaggacctcgtccaggccggtctcgtc
gcgctgaccgagtgtgcgcagaagcatgcaggtcccaccgaggacggctttgccgcctac
gccaagatgcgcgtgcgcggggcgatggtggacatgatccggcgcaccgtgccgatgtcg
cgcggggcgaacgagcggcgtcgccacctcgccgagaaggaaaccgccctgcgcggcacg
ctaggccgtgatccgctgccgcacgagctggcgcgggcgatgggcatcgacgaaagcgaa
ctggccaccctgcgcaacgccagccagccgctgcgcttcgattctatcgacgaggtctat
tcagaccagaacatggccttcgcgaccgagacccccgacagcttcgcgatgctggcggac
gaggaaacgcgcggcgccgtcatcgcggcgatcaccggcctgcccgaccgcctcaagctg
atcgtccagctctacttcgtcgaggaactcaacctcgccgagatcgccgaggtgctccag
gtttccgtgccgcgcgtgcaccagttgaaggcgcaggcgatcgacaagttgcgcagcggc
ctgcagggcgtcgtcgacgtgctttga
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