Novosphingobium sp. BL-52-GroH: ACFFDA_23585
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Entry
ACFFDA_23585 CDS
T11269
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
novb Novosphingobium sp. BL-52-GroH
Pathway
novb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACFFDA_23585 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
novb03021
]
ACFFDA_23585 (rpoC)
03400 DNA repair and recombination proteins [BR:
novb03400
]
ACFFDA_23585 (rpoC)
Enzymes [BR:
novb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACFFDA_23585 (rpoC)
Transcription machinery [BR:
novb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACFFDA_23585 (rpoC)
DNA repair and recombination proteins [BR:
novb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACFFDA_23585 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
XKH12471
LinkDB
All DBs
Position
1:complement(2257614..2261918)
Genome browser
AA seq
1434 aa
AA seq
DB search
MNDLSKFTNQMAKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKLLERVLYFESYIVTEPGLTPLEKYQMLTEDEMLDAQDEYGEDAFSAG
IGAEAVKHMLMNLDLEQERADLLQELETTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLDRDGEPGEGMKFSDMAEVHQALHV
AAVTLHSKIEARVPQTDENGNQYMARFHTTPGRMLLAECLPRSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMSLGFRHAFKAGISFGKDDMIIPDSKVALVAETKELV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIKAQPIDPETGRMAQINSIYM
MSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVVIDDCGTERALEMRSIVQGGSTIASLAERILGRTL
AEDIVDKEGNVIASTGQLLDEPAVAAIEATGLQAARIRSPLVCEATQGVCGKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLEAVSAGHVEYRDIPTI
VDKRNRLLSLARNGEIVLFDNEGRERAIHRVPYGTVLLHTNGAKVEQGERLAEWDPFTLP
IITETSGIVKYQDLIDTRTLTEHVDDATGMTSRVVTEDRSSSRAKKKEDLRPRITLLDDA
SGESARYMLAPGTTLSVEDGQRIEAGDIVARASREAAKTRDITGGLPRVAELFEARKPKD
NAVIAKVSGRVEFVRDYKAKRKIAIIPEEGEPVEYLIPKSKVVDVQEGDWVKKGDNLVSG
SPDPHDILEVLGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTT
LLAAEQVDYEEMAEYNAKLNPGQKPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTQ
AAVEGKTDSLIGLKENVIVGRLIPAGTGAGMNRVRVAATSRDAALRAATRRMQEALILAN
TAEEEHKAELARDVRDDLGDSPLAAVEGETHGTDADAGDYLIKGDDQTEGGDEA
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgtccaaattcacgaaccagatggcgaagcccgagacgttcgaccagatc
cagatcggtctggcgagccccgagcgcatccgctcctggtccttcggcgagatcaagaag
ccggaaaccatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgcgcgc
atcttcggtcccgtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtgtgcgaaaagtgcggcgtcgaagtcaccgtgaccaaggtgcgccgcgag
cgcatgggccacatcgagctggccgccccggtcgcgcacatctggttcctcaagtcgctg
ccttcgcgcatcggcctgctgctcgacatgcagctcaagctgcttgagcgcgtcctctac
ttcgagagctacatcgtcaccgagccgggcctgaccccgctcgagaagtaccagatgctc
accgaagacgagatgctcgacgcccaggacgagtatggcgaagacgccttctcggccggc
atcggcgcagaggccgtcaagcacatgctgatgaacctcgacctcgagcaggagcgtgcc
gaccttctccaggagcttgagacgacgaagtcggaactcaagcccaagaagatcatcaag
cgcctcaaggtcgtggaatcgttcatcgattcgggcaaccgtcccgagtggatgatcctc
gacgtcgtgccggtcatcccgcccgagctgcgcccgctggtgccgctggacggtggccgc
ttcgcgacctcggacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgtctg
aagcgcctgatcgagctgcgcgcgcctgacatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggtcgacgcgctgttcgacaacgggcgccgcggccgcgtcatcacgggtgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaaccttctgggcaagcgcgtcgactactcgggccgttcggtcatcgtgaccgggccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagcct
ttcatctacgcccgcctcgatgccaagggtctgtccatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctcgacgaagtcattcgcgagcac
ccggtcatgctgaaccgcgcgcccacgcttcaccgcctcggcatccaggccttcgagccc
gtgctgatcgagggcaaggcgatccagctccacccgctcgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggtgctgggcctgtactacctgtcgctcgaccgcgacggc
gagccgggcgagggcatgaagttctcggacatggccgaagtgcaccaggcgctccacgtc
gccgccgtcacgctccactcgaagatcgaggcgcgcgtgccgcagaccgacgagaacggc
aaccagtacatggcgcggttccacaccacgccgggccgcatgctgctggccgagtgcctg
ccgcgctcgcacaaggtgcccttcgacgtcgtcaaccgccttctcaccaagaaggaaatc
ggtgacgtcatcgaccaggtctaccgtcacaccggccagaaggacacggtgctgttcgcc
gacgcgatcatgtcgctgggcttccgccacgcgttcaaggccggcatctcgttcggcaag
gacgacatgatcatcccggacagcaaggtcgccctcgtcgccgagaccaaggaactggtc
gcggactacgagcagcagtaccaggacggcctgattacccagcaggagaagtacaacaag
gtgatcgacgcctggagccgctgcggcgaccaggtggcgaacgccatgatggacgagatc
aaggcccagccgatcgatcccgagacgggccgcatggcccagatcaactcgatctacatg
atgagccactcgggcgcgcgtggttcgccggcgcagatgaagcagctcgccggtatgcgc
ggcctcatggccaagccgtcgggtgagatcatcgagaccccgatcatctcgaacttcaag
gaaggcctgaccgtccttgagtacttcaactcgacccacggtgcccgtaagggcctggcg
gacacggcgctcaagacggcgaactcgggttacctgacccgccgcctcgtcgacgtttcg
caggactgcgtggtcgtcatcgacgactgcggcaccgagcgcgcgctggaaatgcgttcg
atcgttcagggcggttccaccatcgcctcgcttgccgagcgcatcctgggccggaccctg
gccgaggacatcgtcgacaaggaaggcaacgtcatcgcctcgaccgggcagctgctcgac
gagccggccgttgccgcgatcgaagccaccggcctgcaggccgcgcgcatccgttcgccg
ctggtctgcgaagcgacccagggcgtctgcggcaagtgctacgggcgtgacctcgcccgt
ggtaccccggtgaacatcggtgaagccgtcggcgtcatcgcggcgcagtcgatcggtgag
ccgggtacgcagctgaccatgcgtaccttccacatcggcggtgcggcgcagctcaacgag
acctcgcacctcgaggcggtcagcgcgggccatgtcgaataccgcgacatcccgacgatc
gtcgacaagcgcaaccgtctcctgtcgctggcccgcaacggcgagatcgtgctgttcgac
aacgaaggccgcgagcgcgctatccaccgcgtgccttacggtacggtgctgctgcacacg
aacggcgcgaaggtcgagcagggcgaacgcctggccgagtgggatccgttcacgctgcct
atcatcaccgagacctcgggcatcgtgaagtaccaggacctgatcgacacccgcacgctg
accgagcacgtcgacgatgcgaccggcatgaccagccgcgtcgtgacggaagaccgttcg
tccagccgcgccaagaagaaggaagacctgcgtccgcgcatcacccttctcgacgacgcg
agcggggaatcggcgcgctacatgctcgctccgggcaccaccctgtcggtcgaggacggc
cagcggatcgaagcgggcgacatcgtcgcgcgtgccagccgcgaagccgccaagacccgc
gacatcaccggtggtctgccgcgcgtcgccgaactgttcgaagcccgcaagccgaaggac
aacgcggtcatcgccaaggtctcgggccgcgtcgaattcgttcgcgactacaaggccaag
cgcaagatcgcgatcatccccgaggagggtgaacccgtcgagtacctgatccccaagtcc
aaggtcgtggacgttcaggaaggtgactgggtcaagaagggcgacaacctggtttcgggc
tcgcccgacccgcacgacatcctggaagtcctcggcgtggaagcgctggcggaatacctg
gttgcggaaatccaggaagtctaccgactgcagggcgtgaagatcaacgacaagcacatc
gaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgacggcggcgacaccacg
ctgctggcggccgagcaggtcgactacgaggaaatggccgagtacaacgccaagctgaac
cccggccagaagccggccgaaggcaagccggtgctgctgggcatcaccaaggcctcgctg
cagacgcgctcgttcatctcggcggcttcgttccaggagaccacccgcgtgctcacgcag
gcggccgtggaaggcaagaccgactcgctgatcggcctcaaggagaacgtcatcgtcggc
cgcctgatcccggcgggcaccggcgccggcatgaaccgcgtccgcgtggcggccaccagc
cgcgacgccgccctgcgcgcggccacccgccgcatgcaggaggccctcatcctcgccaac
acggccgaggaagagcacaaggcggaactggcccgcgacgtgcgcgacgacctgggtgac
agcccgctggcggccgtcgagggcgagacccacggcaccgacgccgatgcgggtgactac
ctcatcaagggtgacgaccagaccgagggcggcgacgaggcataa
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integrated database retrieval system
