Novosphingobium sp. BL-52-GroH: ACFFDA_26845
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Entry
ACFFDA_26845 CDS
T11269
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
novb Novosphingobium sp. BL-52-GroH
Pathway
novb00470
D-Amino acid metabolism
novb00550
Peptidoglycan biosynthesis
novb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
ACFFDA_26845 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
ACFFDA_26845 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
novb01011
]
ACFFDA_26845 (murD)
Enzymes [BR:
novb01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
ACFFDA_26845 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
novb01011
]
Precursor biosynthesis
Amino acid ligase
ACFFDA_26845 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
NAD_binding_7
DUF8081
Motif
Other DBs
NCBI-ProteinID:
XKH13079
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All DBs
Position
1:2940028..2941374
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AA seq
448 aa
AA seq
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MIVSPIFAGKRYAVLGLARSGLTAVATLVESGAHVMAWDSRDEARQSLCEWTDCGKVELA
DPVSADLTGYDGVVVSPGIPLNRHPIAEAAARSGVPVIGDIELFALARPHLPAHRVVGIT
GTNGKSTTTSLVCHLLECAGVRARAGGNIGVPVLGTEPLPAGSVYVLELSSYQIDLTRSL
DCEVTALLNITPDHLDRYEGFEAYAASKARLFAMQGRAGHAIFGTGDRETRAFAHIEAAQ
RAPGLVRMVDGGDLAPLQKEWPSLQGPHNLQNAAVAVAIVEALGVKKAQWRKHLRTFSGL
PHRMERVAEANGVTYINDSKATNPASTAPAIAAFPPEPNPRIHWILGGLPKGDNLDECVP
FFGNIAAAYTIGDAGPRFAEILAPHVPVHNSEMMAEAIREAMAAAKPGDVVMLSPACASF
DQFRDYEARGQAFRQIVEALLAPDEGTA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtctcccccatcttcgccggcaagcgctacgccgtcctcgggcttgcccgttcg
gggctgacggcggtcgccacgctggtggagagcggggcgcacgtcatggcctgggacagc
cgcgacgaagcgcgccagtcgctgtgcgagtggaccgactgcggcaaggtggagctggcc
gacccggtctcggccgacctcaccggctacgacggggtggtcgtgtcgcccggcatcccg
ctcaatcgccaccccatcgccgaagccgccgcacgctcaggcgtgccggtcatcggcgac
atcgaactcttcgcgctggctcggccccacctgccggcgcaccgtgtcgtcggcatcacc
ggcaccaacggcaagtcgaccacgacctcgctggtctgccacctgctcgaatgcgccggc
gtgcgtgcgcgcgccggcggcaacatcggcgtgccggtcctcggcaccgaaccgcttccg
gccggcagcgtctacgtgctcgaactgtcgagctaccagatcgacctcacccgcagcctc
gactgcgaggtaacggcgctgctcaacatcacccccgatcacctcgaccgctacgaaggg
ttcgaggcctatgccgcgtccaaggcgcgcctgttcgcgatgcagggcagggccggtcac
gccatcttcggcaccggcgaccgggaaacccgcgccttcgcccatatagaggccgcgcag
cgcgcgccggggctggtacgcatggtcgacgggggcgaccttgccccacttcagaaggaa
tggccttcgctgcagggcccgcacaacctccagaacgccgccgtcgccgtcgcgatcgtc
gaggcgctgggggtgaagaaggcgcagtggcgcaagcacttacgcactttcagcggcttg
ccgcaccgcatggagcgcgtcgccgaggcgaacggggtcacttacatcaacgacagcaag
gcgaccaacccggcctccaccgcgccggccatcgccgccttcccgccagagcctaatccc
cgcatccactggattctgggcgggctgcccaagggcgacaacctcgacgagtgtgtgccg
ttcttcggcaacatcgccgccgcctacaccatcggcgatgccggcccgcgtttcgcagag
atcctggcgccgcacgtccccgtccacaactccgagatgatggccgaggcgatccgcgag
gcgatggctgccgcgaaacccggtgacgtcgtcatgctctcgcccgcctgcgccagcttc
gaccagttccgcgactacgaagcgcgcgggcaggccttccgccagatcgtcgaggcgctc
ctcgcacccgatgaggggaccgcctga
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