Novosphingobium sp. BL-52-GroH: ACFFDA_27085
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Entry
ACFFDA_27085 CDS
T11269
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
novb Novosphingobium sp. BL-52-GroH
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
novb03032
]
ACFFDA_27085
03400 DNA repair and recombination proteins [BR:
novb03400
]
ACFFDA_27085
Enzymes [BR:
novb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ACFFDA_27085
DNA replication proteins [BR:
novb03032
]
Prokaryotic type
DNA Topoisomerases
ACFFDA_27085
DNA repair and recombination proteins [BR:
novb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ACFFDA_27085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XKH13125
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All DBs
Position
1:2988369..2989346
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AA seq
325 aa
AA seq
DB search
MTRLKFADDTAAGITRKPIRGSKWAYYGADGARITERDEIDRLNRIALPPAYENCWFSAD
PHVHLLAVGYDARGRKQYRYHPDWRESREAMKFELCPRFGAALPALRERVAEDLAGRRLG
RERAIASVVALLDTGAIRVGNECYAKANKSFGATTLRNRHATIERGTLRLRFKGKSGKLQ
EIACDDPSLVRCVRKMQDLPGQHLFQYLDEDGDAVPVHSHDVNAYLAETMGEGFTAKHFR
TWAASTLAFSLMWDQRGVSLRTLLEEVSQCLGNTPAIARKSYVHPAVIAAAKGDAGAPAL
PDKLPRSTRWMTREERGLLKFLEAA
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgcctcaaattcgccgacgacacggctgcgggcatcactcgcaagccgattcgc
ggcagcaagtgggcctactacggcgctgacggtgcgcggatcaccgagcgcgacgagatc
gaccgcctcaaccgcatcgccctgccgccggcctacgagaactgctggttctcggccgat
ccgcacgttcacctgctggccgtcggctacgacgcgcgggggcgcaagcagtaccgctac
catccggactggcgggaatcgcgcgaggcgatgaagttcgaactgtgcccccgcttcggt
gcggcgctgcccgccttgcgcgagcgggtcgccgaagacctcgccggtcgcaggctgggc
cgcgagcgcgcgatcgcctcggtcgtggcgctgctcgataccggcgcgatccgcgtcggc
aacgagtgctatgccaaggcgaacaagagcttcggcgcgacgaccttgcgcaaccgccat
gccacgatcgagcgcggcactttgcgtctgcgcttcaagggcaagtcgggcaagctgcag
gagatcgcctgcgacgatccctcgctggtgcgctgcgtgcgcaagatgcaggacctgccc
ggccagcacttgttccaatacctcgacgaggacggcgatgcggtcccggtgcacagccac
gacgtcaatgcgtatctggccgagacgatgggggagggcttcactgccaagcacttccgc
acatgggcggcgagcaccctggccttctcgctgatgtgggaccagcgcggggtatcgttg
cgcactttgctcgaggaggtctcgcaatgcctgggcaacaccccggcgatcgcgcgcaag
tcctacgtccatcccgccgtgatcgccgccgccaagggcgatgccggtgctcccgcgctc
ccggacaagctgccgcgcagcacgcgctggatgacccgcgaggagcgcggcctgctcaag
ttcctggaagcggcttga
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