Novosphingobium sp. BL-52-GroH: ACFFDA_29170
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Entry
ACFFDA_29170 CDS
T11269
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
novb Novosphingobium sp. BL-52-GroH
Pathway
novb03030
DNA replication
novb03430
Mismatch repair
novb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACFFDA_29170 (dnaE)
03430 Mismatch repair
ACFFDA_29170 (dnaE)
03440 Homologous recombination
ACFFDA_29170 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
novb03032
]
ACFFDA_29170 (dnaE)
03400 DNA repair and recombination proteins [BR:
novb03400
]
ACFFDA_29170 (dnaE)
Enzymes [BR:
novb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ACFFDA_29170 (dnaE)
DNA replication proteins [BR:
novb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ACFFDA_29170 (dnaE)
DNA repair and recombination proteins [BR:
novb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ACFFDA_29170 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
XKH13505
LinkDB
All DBs
Position
1:3438777..3442379
Genome browser
AA seq
1200 aa
AA seq
DB search
MAHAPFVPLRIFSSFTMLDGAIDPKAIAKLAKERKFPAAGICDRNGLYGAPIFAGAAKGA
GVQPVIGTFLAIARPGAVSQGQDLPIDWLALFAQNEAGWLNLCHHVSRAHLDRPLELDPH
VQLESLRGYSDGLICLTGGNEGALARLFAAGKYDAAESYCDTLQSLFGDRLYIEITRTGE
PEEDESEEELIALAYQRDIPLVASNPAQFPEQTFHAAHDALLCIANSTHIDAPDRPRSSS
ERWVKPVAVMQELFADLPEALANTLVVAQRCAYAPPKRKPLLPSLAGDREGEARMLADDS
RRGLAARLAPYWPEVTEAELDEAMAFKGEERRAAYEILREKGVTEDFLVYADRLDFEVDI
IVGMGFPGYFLIVADFIKWAGDNGIPVGPGRGSGAGSLVAWALTITGLDPLKLGLLFERF
LNPERVSMPDFDIDFCETRRGEVIRYVQAKYGSDHVAQIITFGKMKARAVLRDCGRILQM
SYGRVDSLCKMVPNHPTDPWTLTEALHGRKFQGVTKDPPVAEFRREYDMDPEVRRLLDLA
VQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKYVEDTGLVKFDFLG
LKTLSVLRKACDLLERRGVTINLSTLAWDDPAVYELLKRGDTVGVFQLESEGMRRTLAAV
KPTNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEAIEYPHEKLSVILGETYGIFVYQEQV
MQAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRQRFVEGCKTVSGIEKAKANELFDLID
KFAGYGFNKSHAAAYALLAYHTAWFKAHYPHEFYAAAMCFDMHQSEKLAIFVDDMRRNGI
ELAAPDINKSEAEFIVEETAESHAVRYALAGIRNVGEKAMDAIVAERVANGPFESLDDVF
RRAPAGSMNRRQLESLAAAGGFDSLEPNRAKVLANADILLAEADRSSRERNSSQHGLFGG
DDHEEQGLRLVDAERWSRADQMAKERENFGFYFAAHPVEQYRAVASANGARTYGSLMAGG
GGGGRTGAVMAAMVESVQKRKTRKGKDFVMADFSDQSGNFSASCFEESLVENFVRWSKEG
TCILLNVELDSPSVDEPPRVTVRGGRPLAEVKADARMVLKLDIDRIDAVQELALLMRPGA
KGSGEVIATLHLGEGREQKVRLGRDFALDGEFAEHLQGVAGISNVSLTARRGPERVPMAA
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcccatgctcccttcgtaccgcttcgcatcttctccagcttcaccatgctggatggc
gcgatcgatccgaaggcgatcgccaagctggccaaggagcgcaagttccccgccgccggc
atctgcgaccgcaacggcctttacggcgccccgatcttcgcgggcgcggcaaagggtgcg
ggcgttcagccggtcatcggcacgttcctcgcgatagcccgcccgggagccgtttcgcag
gggcaggacctgccgatcgactggctggcgctgttcgctcagaacgaggcgggctggctc
aacttgtgccatcacgtcagccgcgcgcacctcgaccgtccgctggaactcgatccgcac
gtccagctcgaatcgctgcgcggttacagcgatggactgatctgcctgaccggcggcaac
gaaggcgccctcgcgcggctgttcgctgccggcaagtacgacgcggcggaaagctactgc
gacaccctgcagtcgctgttcggcgaccgtctctacatcgagatcacccgcaccggcgag
cccgaggaggacgagagcgaggaggagctgatcgcgctcgcctaccagcgcgacatcccg
ctggtggcctccaacccggcgcagttccccgagcagacgttccacgccgcgcacgatgcc
ttgctgtgcatcgccaattccacccatatcgacgcgccggaccgtccgcgctcctcctcg
gagcgctgggtcaagccggtcgccgtgatgcaggaactgttcgcggacctgcccgaagcg
ctggccaacacgctcgtcgtcgcccagcgctgcgcctatgcgccgcccaagcgcaagccg
ctgctgcccagcctcgccggtgaccgcgagggcgaggcgcgcatgctggccgacgattcg
cgccgcggcctcgcggcgcgcctggcgccctactggcccgaagtcaccgaggccgaactc
gacgaggcaatggccttcaagggcgaggagcgccgcgccgcctacgaaatcctgcgcgaa
aagggcgtcaccgaagacttcctcgtctatgccgaccgcctcgatttcgaagtcgacatc
atcgtcggcatgggcttccccggctacttcctcatcgttgccgacttcatcaagtgggcg
ggcgacaacggcatcccggtgggcccgggccgtggttcgggcgccggttcgctggtcgcc
tgggcgctgacgatcaccgggctcgacccgctcaagctgggcctgctgttcgaacgcttc
ctcaatccggaacgcgtctcgatgcccgacttcgacatcgacttctgcgaaacccggcgc
ggcgaggtgatccgctacgtccaggccaagtatggcagcgatcacgtcgcccagatcatc
accttcggcaagatgaaggcccgcgcggtgctgcgcgactgcgggcgcatcctgcagatg
agctacggccgcgtcgacagcttgtgcaagatggtgcccaaccatccgaccgacccctgg
acgctgaccgaggcgctccacggccgcaagttccagggcgtcaccaaggacccgccggtc
gccgagttccgccgcgaatacgacatggacccggaagtccggcggctgctcgaccttgcc
gtgcagttggaaggcctgccgcgcaactcgtccacccacgcggccggcgtcgtgatcggc
gatcgtccgctggcgcaactggtgccgctctatcgcgatccgcgctcggacatgccggtg
acccagttcgacatgaaatatgtcgaggacacgggcctcgtgaagttcgactttctcggc
ctcaagacgctttcagtgttgcgcaaggcctgcgacctgctcgaacggcgcggcgtgacg
atcaacctgtcgacgctcgcgtgggacgatccggcggtctacgaactgctcaagcgcggc
gacaccgtcggcgtgttccagctcgaatccgaaggcatgcgccgcaccctggcagcggtg
aagccgaccaacttcggcgacatcatcgcgctcgtctcactctaccggccgggcccgatg
gacaacatcccgctgttcggccgtcgcaagaacggcctagaagccattgaatacccgcac
gaaaagctctcggtgatcctgggagagacttacggcatcttcgtctaccaggagcaggtc
atgcaggccgcgcagatcctggcgggctattcgctgggtgacgccgaccttctgcgccgt
gccatgggcaagaaggtgcaggccgagatggacgcgcagcgccagcgcttcgtcgagggc
tgcaagaccgtgtccggcatcgagaaggccaaggcgaacgaactgttcgacttgatcgac
aagttcgcgggctacggcttcaacaagtcgcacgccgccgcctacgcgctgctcgcctac
cacaccgcctggttcaaggcgcactatccgcacgagttctacgccgccgccatgtgcttc
gacatgcaccagtcggaaaagctggcgatcttcgtcgacgacatgcgccgcaacggcatc
gaactggcggcgcccgacatcaacaagtcggaagccgagttcatcgtcgaggaaacggcc
gaaagccatgccgtgcgctacgcgctggcgggcatccgcaacgtcggcgagaaggccatg
gacgcgatcgtcgccgagcgcgtggcgaacggtccgttcgaaagcctcgacgacgtgttc
cgccgcgccccggcaggttcgatgaaccgccgccagctcgaaagtctggctgcggccggc
ggtttcgattcgctcgaacccaaccgcgccaaggtcctcgccaatgccgacatcctgctg
gccgaggccgaccgctcctctcgcgagcgcaattcgagccagcacggcctgttcggcggc
gacgatcacgaggagcagggcctgcgcctcgtcgacgccgagcgctggagccgcgccgac
cagatggccaaggagcgcgagaacttcggcttctatttcgccgcgcacccggtcgagcag
taccgcgcggtcgcctcggccaacggcgcgcgcacgtacggcagcctcatggcgggcggg
ggcgggggcgggcgtaccggcgcggtcatggcggcgatggtggagagcgtgcagaagcgc
aagacgcgcaagggcaaggacttcgtcatggccgatttctcggatcaatcgggcaacttc
tccgcctcgtgcttcgaggagagcctggtcgagaacttcgtgcgctggtcgaaggagggc
acctgcatcctgctcaacgtcgaactcgattcgcccagcgtcgacgagccgccgcgcgtg
acggtgcgcggcgggcgaccgctggccgaggtcaaggccgatgcccggatggtgctgaag
ctcgacatcgaccggatcgacgccgtgcaggaactcgccctgctgatgcgcccgggcgcc
aaggggagcggcgaggtgatcgcgacgctgcacctgggcgaagggcgcgagcagaaagtg
cgcctcgggcgcgacttcgcgctcgacggtgaattcgccgagcacctgcagggcgttgcg
ggcatcagcaacgtctcgctgacggcccggcgcgggcccgagcgtgtgcccatggcggcc
tga
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