Novosphingobium sp. BL-52-GroH: ACFFDA_29315
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Entry
ACFFDA_29315 CDS
T11269
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
novb Novosphingobium sp. BL-52-GroH
Pathway
novb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
novb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ACFFDA_29315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
novb03400
]
ACFFDA_29315
Enzymes [BR:
novb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
ACFFDA_29315
DNA repair and recombination proteins [BR:
novb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ACFFDA_29315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
XKH13533
LinkDB
All DBs
Position
1:complement(3478552..3479940)
Genome browser
AA seq
462 aa
AA seq
DB search
MIAVDLHEPDDFEAWRSEARRLIGLGTPPDAVAWSEAGGTSDLFAAPSAAPAGPAREVRA
SRAFVELARSVVLHADPARLALLYRVLWRLQDCPRLLDDAADRDVAALERLARQVRRDIH
KMRAFVRFRSVTDDDGVERYIAWFEPEHRIERYNADFFVNRFASQRWSILTPRLSLHWDG
MTLLEGLPASKADAPDEDATEELWLGYYRSIFNPARLKVGMMLKEMPRRYWKNLPEARQI
PDLIAGARQRETEMIAIGASLFEDAAPTSLEAVAQGIAQCRRCAIGCNGTRAVMGEGPAH
AALMIVGEQPGDTEERENRPFVGPAGQLLDRALGEAGIDRQAAYITNAVKHFKFAPRGKR
RLHQTPTAGEIDICRWWLDGERALVKPRVTLALGASSARGLLGRTPSIGRERGQALVQPD
GTTVWLTAHPSYLLRLDGAAREREHARFAEDLAGLSKLLANV
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcggtggacttgcacgagcccgacgatttcgaggcctggcgcagcgaggcgcgg
cggctgatcggcctgggcaccccgcccgatgccgtcgcctggagcgaggcgggcggcacg
agcgacctgttcgccgcgccctccgcagcgcccgctggcccggcccgcgaagtgcgcgcc
agccgcgctttcgtcgaactggcccgaagtgtcgtcctgcacgccgatccggcgcggctg
gcgctgctctaccgcgtgctctggcgactgcaggactgcccccgcctgctcgacgacgct
gccgaccgcgacgtcgccgcgctggaacggctggcccggcaagtgcgccgcgacatccac
aagatgcgcgccttcgtgcgcttccgctccgtcaccgacgacgacggcgtcgaacgctac
atcgcctggttcgagcccgagcaccggatcgagcgctacaacgccgatttcttcgtcaac
cgcttcgccagccagcgctggtcgatcctcaccccgcgcctgtcgctgcactgggacggc
atgaccctgctcgaaggcctgcccgcctcgaaggccgatgcccccgacgaggacgccacc
gaggaactctggctcggttactaccgttcgatcttcaaccccgcgcggctcaaggtgggc
atgatgctcaaggaaatgccgcgccgctactggaagaacctgcccgaagcgcgccagatc
cccgatctcatcgccggggccagacagcgggagaccgagatgatcgcgatcggcgccagc
ctgttcgaggacgcagcccccaccagcctggaggccgtcgcccagggcatcgcgcaatgc
cgccgctgcgccatcggctgcaacgggacgcgcgcggtcatgggcgaaggccccgcccac
gccgcgctgatgatcgtgggcgaacagcccggcgacaccgaggaacgcgagaaccgtccg
ttcgtcggccccgccggccagttgctcgaccgcgcgctgggagaggccggcatcgatcgc
caggcggcctacatcaccaatgccgtcaagcacttcaagttcgcgccgcgcggcaagcgc
cgcctgcatcagacgccgacggccggcgagatcgacatctgccgctggtggctcgacggc
gagcgggcgctggtcaagccccgcgtgaccctggcactgggcgccagcagcgcccgcgga
ctgctcggccgcactccttcgatcgggcgcgagcgcgggcaggcactggtccagccggac
gggacgacggtatggctgaccgcccaccccagctatctcctgcgcctcgatggcgccgcg
cgcgagcgcgaacatgcgcggtttgccgaggatcttgcgggtctgtcgaagctattggcg
aacgtctga
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