Novosphingobium sp. ES2-1: IM701_04255
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Entry
IM701_04255 CDS
T10689
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
novo Novosphingobium sp. ES2-1
Pathway
novo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
novo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM701_04255 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
novo03019
]
IM701_04255 (pnp)
03016 Transfer RNA biogenesis [BR:
novo03016
]
IM701_04255 (pnp)
Enzymes [BR:
novo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IM701_04255 (pnp)
Messenger RNA biogenesis [BR:
novo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IM701_04255 (pnp)
Transfer RNA biogenesis [BR:
novo03016
]
Prokaryotic type
tRNA degradation factors
IM701_04255 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QOV94682
LinkDB
All DBs
Position
858032..860347
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AA seq
771 aa
AA seq
DB search
MFDVKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSY
DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGFVDGEYVLNPKQDAALTDGRLDLVV
AATDSAVMMVESEAKELSEDEMLGAVLFAHDECRKVIGAIIELAEKAAKDPWEIDLSDNT
ADIKKKLKDLVGADIAAAYKLTNKSARSDALNAARAKAKEAFAGETPQTQMVAIKTMKKV
EADIVRGAILKDGTRIDGRSVTQVRPIESMVGFLPRTHGSALFTRGETQTICTTTLGTKD
AEQMIDGLEGLRYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKDE
FPYTIRVLSDVTESNGSSSMATVCGGCLSMMDAGVPIKRPVSGIAMGLILEGSEFAVLSD
ILGDEDHLGDMDFKVAGTSEGITTMQMDIKVAGITREIFEVALKQASEGRAHILNEMTKA
LGEARTELSAHAPRIETLQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISSS
DLTQIEAAKNWILGIVEEAEVGKIYKGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVE
KPTDVVKEGQDVYVKVLEIDQRGKVRLSMRVVDQETGAELEDTRPAREPREPRGDRGDRG
DRRGPRGNDRGGRGDRSPRGDRGREGGDRPRRDREDGPAPDHMPAFLKSDD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtcaaaaccgtatcgctggagtggggcggaaagaccctcaccctcgaaacc
ggccgcattgcccgtcaggctgacggcgcggtcctcgccacttacggcgaaactgtagtc
ctttgcgcggtcaccgcggcaaagtcggtcaaggaaggccaggacttcttcccgctgacc
gtccactaccaggaaaagtattcggcagctggccgcattccgggcggtttcttcaagcgc
gagcgcggcgcgacggaaaaggaaacgctggtttcccgcctgatcgaccgtccggttcgc
ccgctgttccccgaaggtttctacaacgaaatcaacgtcatcgcccaggttctgagctat
gacggcgagaccgaacccgatatcgtcgcgatgattgcggcctcggctgcgctgaccatc
tcgggcgttccgttcatgggcccgatcggcgctgcgcgcgtcggcttcgtcgatggcgaa
tacgtgctgaacccgaagcaggacgccgcgctgaccgatggccgcctcgacctcgtggtc
gccgcgaccgactctgccgtgatgatggtggaatcggaagccaaggaactgagcgaagac
gaaatgctcggtgccgtgctgttcgcgcatgacgagtgccgcaaggtcatcggtgcgatc
atcgaactggccgagaaggctgcgaaggatccctgggaaatcgacctgtcggacaacacc
gccgacatcaagaagaagctcaaggacctcgtcggcgcggacatcgccgctgcctacaag
ctgaccaacaagtcggcccgttccgacgcgctgaacgccgcccgcgccaaggccaaggaa
gcgttcgccggtgaaacgccgcagacccagatggtcgccatcaagaccatgaagaaggtc
gaggccgacatcgtgcgcggcgccatcctcaaggacggcacccgcatcgacggtcgttcg
gtcacgcaggtccgcccgatcgaatcgatggtcggcttcctgccgcgcacccacggttcg
gcgctgttcacgcgcggtgaaacgcagaccatctgcaccaccacgctgggcaccaaggac
gccgagcagatgatcgatggccttgaaggcctgcgctacgaaaacttcatgctccactac
aacttcccgccgtactcggttggcgaagttggccgtttcggcgcgccgggccgtcgtgaa
gtgggccatggcaagctggcatggcgcgcactgcacccggtgctgccgaccaaggacgag
ttcccctacaccatccgcgtcctttcggacgtgaccgagtcgaacggctcgtcgtcgatg
gccaccgtctgcggcggctgcctttcgatgatggacgcgggcgtgccgatcaagcgcccg
gtttcgggcatcgccatgggcctcatccttgaaggcagcgagttcgccgtcctctcggac
atcctgggcgacgaggaccacctcggcgacatggacttcaaggtggcaggcacgtccgaa
ggcatcaccacgatgcagatggacatcaaggtcgccggcatcacgcgcgaaatctttgag
gttgccctcaagcaggcttcggaaggccgcgcgcacatcctgaacgagatgaccaaggcg
ctgggcgaagcacgcaccgagctttcggcgcacgcgccgcgcatcgagacgctgcagatc
gacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtgatccgcgagatcgtg
gccaccaccggtgcaaaggtcgacatcgacgacgaaggcctgatcaagatctcgtcttcg
gacctgacccagatcgaagccgccaagaactggatcctcggcatcgtcgaggaagccgag
gtcggcaagatctacaagggcaaggtcgtcaacatcgtcgacttcggcgctttcgtgaac
ttcatgggcggcaaggacggcctcgtccacgtctccgaaatgaagaacgagcgcgtggaa
aagccgaccgacgtggtgaaggaaggccaggacgtttacgtcaaggtcctcgagatcgac
cagcgcggcaaggttcgcctgtcgatgcgcgtcgtcgatcaggaaactggcgcggagttg
gaggacacccgccccgcccgtgaaccgcgtgaaccgcgcggcgatcgtggtgatcgcggc
gaccgtcgtggcccgcgcggcaatgatcgtggtggccgtggtgaccgtagccccagaggc
gatcggggccgtgaaggcggtgatcgtcctcgccgtgaccgtgaagacggtccggctccg
gatcacatgccggcgttcctcaagtccgacgactga
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