Novosphingobium sp. ES2-1: IM701_04960
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Entry
IM701_04960 CDS
T10689
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
novo Novosphingobium sp. ES2-1
Pathway
novo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
novo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IM701_04960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
novo03021
]
IM701_04960
03400 DNA repair and recombination proteins [BR:
novo03400
]
IM701_04960
Enzymes [BR:
novo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IM701_04960
Transcription machinery [BR:
novo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IM701_04960
DNA repair and recombination proteins [BR:
novo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IM701_04960
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
QOV94801
LinkDB
All DBs
Position
1017325..1018389
Genome browser
AA seq
354 aa
AA seq
DB search
MTVNIKNWQELKKPNNLEIKPGNDAKRRATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMQGEGPKRLQLSATGPGEVKAGDI
AVTGDIEVMNKDLVICNLDEGATFNMELTVDTGKGYVPAVSNRPVDAPIGLIPVDSLYSP
VRQVSYKVDNARIGQELDYDKLNLTVETDGTITPEDAVAYAARILQDQLALFVHFDDQVP
VGHVPSVAGGVAAHAPEESDANQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKT
EAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatcaagaactggcaggaactgaagaagcccaacaatctcgagatcaag
ccgggcaacgacgccaagcgccgcgcgacattcgtcgccgaaccgcttgagcgtggcttt
ggtctcaccctcggcaacgcgctgcgtcgcgtgctgctctcctcgcttcagggcgcggcg
gtcacctcgatcaagatcgagaacgttcttcacgaattctcgtcgctcgccggcgtccgc
gaagacgtgaccgacatcgtgctcaacgtgaagcagatcgccctcaagatgcagggcgaa
ggccccaagcgtctgcagctctcggccactggtccgggcgaagtgaaggcaggcgacatc
gccgtcaccggcgacatcgaggtcatgaacaaggacctcgtgatctgcaatctcgacgaa
ggcgcgacgttcaacatggaactgaccgtcgataccggcaagggctatgtccccgccgtg
tcgaaccgtccggttgacgcgccgatcggcctgatcccggtcgactcgctgtactcgccg
gtccgccaggtttcgtacaaggtcgacaacgcccgtatcggtcaggagcttgactacgac
aagctcaatctgacggtcgaaaccgatggcacgatcaccccggaagacgccgtggcctat
gctgcgcgcattcttcaggaccagctcgcgctgttcgtgcacttcgacgaccaggtgccg
gtcggccacgttccttcggttgccggtggcgtcgctgcccatgcaccggaagagagcgat
gccaaccagctcaaccgctaccttctcaagaaggtcgacgagctcgagctgtcggtgcgt
tcggccaactgcctcaagaacgacaacatcatctacattggcgacctggtccagaagacc
gaagccgagatgctgcgcacgccgaacttcggccgcaagtcgctcaacgagatcaaggaa
gtcctttcgtcgatgggcctgcgcctcggcatggacatcccgggctggccgcctgagaac
atcgaagagatggccaagaagctcgagcaagagcttctcggctaa
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