Novosphingobium sp. ES2-1: IM701_07765
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Entry
IM701_07765 CDS
T10689
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
novo Novosphingobium sp. ES2-1
Pathway
novo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
novo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IM701_07765 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
novo03400
]
IM701_07765 (mfd)
Enzymes [BR:
novo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IM701_07765 (mfd)
DNA repair and recombination proteins [BR:
novo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IM701_07765 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
UB2H
AAA_16
Cas3-like_C_2
RecG_dom3_C
AAA_30
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QOV92602
UniProt:
A0A7M2X5D1
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All DBs
Position
1592670..1596164
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AA seq
1164 aa
AA seq
DB search
MSELARILSAKTPLTLSSVARGAQPLVLADLARAAKGRAVFIAPDESAMRAIVESAAFFA
PDLEVIDLPAWDCLPFDRASPALSVSSRRLAALQRLQRKRSGPQLLVTTINAALQRVLTP
FRIRESTRLLSPGTEIGRESLIALLQRQGYSRTDTVVDAGEYAVRGSVFDIYPSGLDHGL
RLDFFGDELETLRLFDPNTQRSVQPVETHLLLPASEALLDDDSIKRFRSRYRELFGANAT
GDPLYQAITDGRRLAGMEHWLPLFEDRLVTLFDHLAEDDLVLIDTTAIKAAEQRIADIAD
YHQSRLDSSSKAPGSYRPLAETALYLSRDELDRALAGWPVHRTTIFAEPESKQVVDFGFT
SSHDFTPERAAATSGGTNIYEAAAKYISALGTRGKKPIIAAYTAGSRSRLASLLAEAGKF
TPQMAETWQEALGLAATGKPAAVVLPLEQGFASDDLELLTEQDILGDRLVRRKKKRKDAD
AFLAELSALTPGDLVVHMDHGIGRYLGLEAIGVGDSPHDCVQLEYSGGDKLYIPVENLDV
LSRYGSDADGVALDKLGGEAWQRRKARMRERILEMAGHLMATAAQRALRQGTVLPVDPAS
YGPFVDRFPWDETEDQERAIDDVLGDMAEGKPMDRLVCGDVGFGKTEVALRAAFVAAMQG
VQVAVIAPTTLLARQHYSNFVERFNGFPLEIGRLSRLVPAKEAAETKAGLASGKVDIVIG
THALLSKSVEFKRLGLVIVDEEQRFGVTHKEKLKELKADVHVLTLTATPIPRTLQMAMSG
LRELSTIQTPPVDRLAVRTYVMPWDDMVMREALLREHQRGGQSFIVVPRIADMPELEEWL
RLNVPEVRFVTAHGQMSPTEVEDRMGAFYEKKYEVLLSTTIVESGIDIPSANTIVIHRAD
RFGLAQLYQLRGRVGRGKIRAYAYLTVPEDMALSEVAEKRLKVLGDLDSLGAGFQLASHD
LDIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAILAAKAGDIGLAREREALSPQITLDAP
IMIPEDYVPDLAARMALYRRMNDAEGPDAVEALAAEMIDRFGPLPAPTQNLLRLIEVKRQ
AIAANIAKIDVGPKGALVSFHKDTFPDPVGLIGYVERLNGVAKLRPDNKLVITRAWGTAE
GRLNGLVQMTKGLAAIVKRAKKAA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaactcgcccgcatcctttcggccaagacgccgctaactctttcgtccgtcgcg
cgtggcgcgcagccgcttgttctggccgatctcgcccgcgccgccaaaggtcgcgccgtc
ttcattgcgcctgacgagtcggcaatgcgggccatcgtcgagagcgccgcattcttcgcg
ccggaccttgaagtcatcgaccttccggcgtgggactgcctgccgtttgaccgtgcctcc
ccggcgctatcggtcagttcccgccgcctcgccgcactgcagcggctgcagcgcaagcgc
agcggaccgcaactgctcgtcacgacgatcaacgccgcgctccagcgcgtcctgacgccg
ttccgtatccgcgaatccacccgcctgctttcgccgggcaccgagatcggccgcgaaagc
ctgatcgcactcctccagcgccaaggctattcgcgcaccgacacggtcgtcgacgctggc
gagtacgcggtgcgcggatcggtgttcgacatctatccttctggcctcgaccacggcctt
cggctggacttcttcggcgacgagcttgaaaccctgcgcctgttcgatccgaacacgcag
cgctcggtgcagccggtcgaaacgcatctcctgctgccagccagcgaagccctgctcgat
gatgacagcatcaagcgctttcgcagccgctaccgcgaactgtttggcgcgaacgccacc
ggcgatccgctctatcaggccatcaccgatggccgtcgccttgccggcatggagcactgg
ctcccgctgttcgaagaccggctcgtcacgctgttcgatcatctggccgaggatgacctt
gtcctgatcgacacgactgcgatcaaggctgccgaacaacgcattgccgacattgccgac
tatcaccagtcgcgcctcgattcctcgtccaaagcgccgggcagctaccgtccactggcc
gagaccgcgctctatctctcgcgcgatgaactggaccgggcgcttgccggttggccggtg
caccgcaccaccatctttgccgagccggaatcgaagcaggttgtcgatttcggcttcact
tcgagccacgatttcacgccggagcgcgctgccgcaacctccggtgggaccaacatctac
gaagcggccgccaagtacatttcggcattgggcacgcgcggcaagaagccgatcatcgcg
gcctatactgccggctcgcgctcacgcctcgcctcgctgctggccgaggccggcaagttc
acgccacagatggctgaaacctggcaggaagcgctcggccttgcggccacgggcaagcct
gccgccgtggtcctcccgctcgaacagggctttgccagcgacgatctggaactgctgacc
gagcaggacatccttggcgaccggctcgtccgccgcaagaagaagcgcaaggatgccgac
gccttcctcgccgaactgtccgcgctcacgccgggcgatctcgtcgtccacatggaccac
ggcatcggccgatacctcggcctcgaagccatcggcgtcggcgacagcccgcacgattgc
gtccagctggaatattccggcggcgacaagctctacatcccggtcgaaaacctcgacgtc
ctttcacgctatggctctgatgccgatggcgttgcattggacaagctgggcggcgaggct
tggcagcgccgcaaggcgcggatgcgcgaacgcatcctggagatggccggccacctcatg
gccacggcggcccagcgcgccctgcgacagggcacggtgctacccgtcgatcccgcgagc
tatggcccctttgtcgaccgcttcccatgggacgaaaccgaggatcaggaacgcgcgatc
gacgacgtcctcggcgacatggccgaggggaagccgatggaccgcctcgtctgcggcgac
gtcggcttcggcaagaccgaagttgccctgcgcgcggcgttcgtcgcagccatgcagggt
gtccaggtggccgtcatcgcgccgacgaccctgctggcgcgccagcactattcgaatttc
gtcgaacgcttcaacggcttcccgctggaaatcggtcgcctctcgcgcctcgtccccgcc
aaggaagctgccgaaaccaaggccgggctggccagcggcaaggtcgatatcgtcatcggc
acccatgcgctcctctccaagtcggtcgagttcaagcgcttgggcctggtcatcgtcgac
gaggaacagcgctttggcgtcacgcacaaggaaaagctcaaggaactgaaggcggacgtt
cacgtcctcaccctcactgccacgccgattccgcgcacgctgcagatggccatgtcgggc
ctgcgtgaactttccacgatccagaccccgccggtggaccgccttgccgtgcgcacctat
gttatgccgtgggacgacatggtcatgcgcgaagccttgctgcgcgaacaccagcgcggc
gggcagagcttcatcgtcgtgccgcgcatcgccgacatgcccgagctcgaggaatggctg
cgcctcaatgtgcccgaagtccgcttcgtgacagcacacggccagatgagcccgaccgag
gtggaggaccggatgggcgcgttctacgagaaaaagtacgaggttctgctttcgaccacg
atcgtcgagagcggcatcgatatcccctcggccaacaccattgtcatccaccgcgccgac
cgcttcgggctggcccagctctaccagctgcgcggacgcgtcggtcgcggcaagatccgc
gcctacgcctatctcaccgtgccagaggacatggcgctgtccgaagtcgccgaaaagcgc
ctcaaggttcttggcgatctcgacagcctcggcgccggcttccagcttgccagccacgac
cttgacattcgcggcgccggcaacctcctcggcgacgagcagtcgggccacatcaaggag
gtgggcttcgaactctatcagtcgatgctcgaggatgcgatccttgcggccaaggccggc
gacatcggcctcgcccgcgaacgcgaggcacttagcccccagatcacgctcgacgcgccg
atcatgatccccgaggactacgtccccgaccttgccgcgcgcatggccctgtaccgccgc
atgaacgacgccgaaggaccggacgctgtagaggccctcgccgccgagatgatcgaccgc
ttcggccccctgcccgcgcccacgcagaacctgctgcgcctgatcgaggtcaagcgccag
gccatcgccgccaatatcgcgaagatcgacgtcggccccaagggagcgctggtcagcttc
cacaaggacaccttcccggaccccgtcggcctcatcggctatgtcgagaggctcaacggc
gttgccaagcttcgtcccgacaacaagctggtcatcacccgggcttggggcacggccgaa
ggacgcctgaacggcctggtccagatgacgaagggtctggctgcaatcgtgaagcgtgcg
aagaaggccgcctaa
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