Novosphingobium sp. ES2-1: IM701_08925
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Entry
IM701_08925 CDS
T10689
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
novo Novosphingobium sp. ES2-1
Pathway
novo03030
DNA replication
novo03430
Mismatch repair
novo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
novo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IM701_08925 (dnaE)
03430 Mismatch repair
IM701_08925 (dnaE)
03440 Homologous recombination
IM701_08925 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
novo03032
]
IM701_08925 (dnaE)
03400 DNA repair and recombination proteins [BR:
novo03400
]
IM701_08925 (dnaE)
Enzymes [BR:
novo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IM701_08925 (dnaE)
DNA replication proteins [BR:
novo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IM701_08925 (dnaE)
DNA repair and recombination proteins [BR:
novo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IM701_08925 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
HHH_3
T2SSK
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
QOV95446
LinkDB
All DBs
Position
complement(1838462..1842052)
Genome browser
AA seq
1196 aa
AA seq
DB search
MPHAPFVPLRIFSSYTMLDGAIDPKAIAKTAAERGFPAAAITDRNGLYGSVAYAKACKDM
GVQPVIGTMLAVARPERDGAATGFGPAAPTVDWLALYAQDARGYDNLCHLVSRAHLERPL
EFEAHVVLADLVGHTDGLICLTAAGEGALARLLAGQQQSAAEAYLDRLQELFPERLYIEI
ARRNEPVEEASEEALIDLAYARNLPLVATNPACFAERGFYDAHDAMLCIASSTHVDSTDR
PRSSKEWWIKPAPVMEEIFKDLPEALANTLVVAQRCAVMPPKRKPILPSLAGDQEGEARM
CAEDSRKGLVLRLKPYYPEAAHAELERVLCLGPDAEPDAADYPQLNVAGVWEEVLDYRKR
LEFEIAIINRMGFGGYFLIVADFIKWAKENDIPVGPGRGSGAGSLVAWALTITDLDPIKL
GLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGLDHVAQIITFGKLKARAVLRD
TGRILQMSYGQTDRLCKMVPNHPTDPWPLPRALNGVVELKREYDRDPEVKRLIDLAMQLE
GLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGLKTL
SVLRKAVDLMAKRGISIDLSALAWDDEQTYKLLQSGDTVGVFQLESEGMRRTLAAVKPTN
FGDIIALVSLYRPGPMDNIPLFGRRKNGLESIEYPHEKLAGILAETYGIFVYQEQVMQAA
QILAGYSLGDADLLRRAMGKKVQAEMDAQRQRFVDGCKTVSDIPAAKANELFDLIDKFAG
YGFNKSHAAAYALLAYQTAWLKTHYPHEFYAASMCFDMHQSEKLSVFVDDMRRNGVALAG
PDINHSEAEFTVERTQDGFAVRYALAGLRNVGEKAMEQIVEEREANGPFASLDDLFKRIP
AGSMNRRQLEALAAGGALDCLEPNRAQVIANAELLMAVADEAARSRTSGQGGLFGGDDHA
TPATRLAETKPWSRADQMAAERENFGFYFAAHPVEEYRAVASANGARSYGSLMTSSGEPG
GRSGAVMAALVENVQKRKTKKGKDFVMADFSDSSGLFSASCFEESLVEPFQQWAKDGTCV
LLNVELDRPNPDEPPRVTVRGARPLASVTSSSRMMLKLEVSKPEAISELAMLLPRGSGGT
GEVLARLRTGGPKEPLVRLGNDFKLDSDLIERLIPIEGLANVALTARPERHLRLVE
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgccccacgcccccttcgttcccttgcgcatcttctcgtcctacacgatgctcgacgga
gcgatcgatcccaaggcgattgccaagacggcggcggagcggggttttccggcggcggcg
attaccgatcgcaacgggctctatggcagcgtcgcctatgccaaggcatgcaaggacatg
ggcgtgcagcccgtcatcggcacgatgctggcggtggcgcggcccgagcgtgatggcgcg
gcgacggggttcgggcctgctgcaccgaccgtcgactggctggcgctctatgcgcaggat
gcacgcggctatgacaacttgtgccacctcgtcagccgcgcgcatcttgagcggcctctg
gagttcgaggcgcatgtcgtgctggcggacctcgttggccacaccgatgggctgatctgc
ctgaccgcggcgggcgagggcgcgctggcgcggctgcttgcggggcagcagcagtctgcg
gccgaagcttacctcgatcgcttgcaggaactgttccccgagcggctctacatcgagatc
gcgcggcgcaacgagccggtggaagaggcgtctgaagaggcgctgatcgatctggcctat
gctcgaaacctgccgctggtggcgaccaatcccgcctgttttgccgagcgcgggttctac
gacgcgcacgatgccatgctgtgcatcgccagttccacccacgttgacagcaccgaccgt
ccgcgttccagcaaggagtggtggatcaagcctgcgccggtaatggaggaaatcttcaag
gacctccccgaagcgctcgccaacacgctggtcgtagcacagcgctgcgcggtgatgccg
cccaagcgcaagccgatcctgccgagccttgccggtgaccaggaaggcgaggcgcggatg
tgtgccgaggacagccgcaagggcctcgtcctgcggttgaagccctattacccggaagcc
gcccacgccgagctggagcgcgtgctgtgccttggcccggatgccgagccggacgctgcc
gattatccgcagctcaatgtcgcgggcgtgtgggaggaagtgctcgactaccgcaagcgg
ctcgagttcgagatcgcgatcatcaaccgcatgggttttggcggctacttcctgatcgtc
gctgacttcatcaaatgggccaaggagaacgacattccggtggggccggggcgcggttcg
ggcgcgggcagccttgtggcatgggcgctgaccatcaccgaccttgatccgatcaagctg
ggcctgctgttcgagcgcttcctcaacccggaacgcgtctcgatgccggacttcgatatc
gatttctgcgaaacccggcgcggcgaggtgatccgctatgtccagcgcaagtacgggctg
gatcacgtggcgcagatcatcaccttcggcaagctcaaggctcgcgccgtgctgcgcgat
accgggcgcatcctgcagatgagctatgggcagaccgaccgcctgtgcaagatggtgccc
aaccatccgaccgacccgtggccgctgccgcgcgcgctgaacggggtggtggaactcaag
cgcgagtatgaccgcgatcccgaggtcaagcgcctgatcgaccttgcgatgcagctggaa
ggcctgccgcgcaacagctcgacccatgcggccggcgtggtgatcggcgaccgcccgctg
gcgcagctggtgccgctctaccgcgatccgcgctcggacatgccggtgacgcagttcgac
atgaagcatgtcgaggatgcgggcctcgtgaagttcgacttcctcggcctcaagacgctg
tcggtgctgcgcaaggcggtcgacctgatggccaagcgcggcatcagcatcgacctttcg
gcgctcgcctgggatgacgagcagacctacaagctgctgcagtcgggcgatacggtgggc
gtgttccagctggaatccgaaggcatgcggcgcacgctggcggcagtgaagccgaccaac
ttcggcgacatcatcgcgctcgtctcgctttaccgtccgggcccgatggacaacatcccg
ctgttcgggcggcgcaagaacggtctcgaaagcatcgagtatccgcacgagaagctggcg
ggaattctcgccgagacctacgggatcttcgtctaccaggaacaggtcatgcaggccgcg
cagatcctggcgggctattcgctcggcgatgcagaccttctgcgccgcgcgatgggcaag
aaggtgcaggccgagatggacgcgcagcgccagcgcttcgtcgatggctgcaagacggtg
tccgacattccggcggccaaggccaacgaattgttcgacttgatcgacaagttcgcaggc
tatggcttcaacaagtcgcacgctgccgcttacgcgctgctggcgtatcagacggcgtgg
ctgaagacgcactatccgcacgagttctatgcggcatcgatgtgcttcgacatgcatcag
tcggaaaagctctcggtcttcgtcgacgacatgcggcgcaatggcgtggcgctggccggg
ccggacatcaaccattccgaggccgagttcaccgtcgagcggacgcaggacggctttgcc
gtgcgctatgcactggcgggcctgcgcaatgtgggcgagaaggcgatggagcagatcgtc
gaggagcgcgaagcgaacgggccctttgcttcgctcgacgacctgttcaagcgcattccg
gcaggatcgatgaaccggcggcagctggaagcgctggctgcgggcggtgcgctcgattgc
cttgaacccaaccgcgcgcaggtgattgccaatgccgaactgctgatggcggtggcggac
gaagcggcgcgctctcgcacgtcggggcagggtggcctgttcggcggggacgatcatgcc
acgcccgccacgcgccttgccgagacgaagccgtggagccgggccgaccagatggcggcg
gagcgcgagaacttcgggttctatttcgcggcgcatccggtggaagaatatcgcgccgtg
gcttcggccaacggggcgagatcgtatggcagcctgatgaccagcagtggcgagccgggc
gggcgttccggcgcggtcatggcggcgctggtggagaacgtgcagaagcgcaagacgaag
aagggcaaggacttcgtcatggccgacttctccgacagttcggggctgttctcggcctcg
tgcttcgaggaatcgctggtcgagccgttccagcaatgggcgaaggacgggacctgcgtg
cttctcaatgtcgaacttgaccggcccaatcccgacgagccgccgcgcgtgacggtgcgg
ggggcaaggccgctggcttcggtgacaagctcgtcgcggatgatgctcaagctcgaggtg
agcaagcccgaggcgatctcggagctggcgatgctcctgccgcgtgggtctggcgggacg
ggcgaagtgctggcgcgccttcggactggcggacccaaggagccgctcgtgcggctcggc
aatgattttaaactggacagcgacttaatcgagcgattgattccgatagaaggactcgcc
aatgtcgccctgaccgcaagaccggaaaggcatctgcggctggtcgaataa
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