Novosphingobium sp. ES2-1: IM701_14075
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Entry
IM701_14075 CDS
T10689
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
novo Novosphingobium sp. ES2-1
Pathway
novo02020
Two-component system
novo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
novo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IM701_14075 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IM701_14075 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
novo03021
]
IM701_14075 (rpoN)
Transcription machinery [BR:
novo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IM701_14075 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_Crp_2
HTH_IclR
Pyr_redox
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
QOV93697
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Position
2876692..2878179
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AA seq
495 aa
AA seq
DB search
MALGPRLDIRQTQSLVMTPQLQQAIKLLALSNLEVETFIGEALEANPLLEIGEPSPTEPV
ETLPEELRRTHLESSPVDQLVSEGRVEEDRPLDIDVSALDRDRDTGDAGAFELSSSRDLS
AGGEGPDIDEHGRFDQTLAEHLHAQIGAITSDPQMLFVARWLIDQLDEAGYIGIPLGEIA
EALGLSLVVVERALTLVQTLDPTGVGARNLAECIALQAKEADRYDPCMARLIDNLDLVAR
GEIARLKRLCQVDDEDFADMLAELRSYDPRPGLRFGGGAAEAVVPDILVRATRDGWNIAL
NQATLPRLVVNRSYYVEMRRACISKDAKAWLGDKLADANWLLKALDQRQKTILKVASELV
KQQDGFFRHGVAHLRPLTLKTVAEAISMHESTVSRVTSNKYLHCERGTFELKYFFTSGVG
SSDGEGASAEAVKAAIRQLIDAEDPKAILSDDALVDLLKAKGFDLARRTVAKYREAIGLG
SSVQRRRQKALAAVR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgggcctcggctggacatcaggcagacccagtcgctggtgatgacgccgcaa
ctccagcaggcgatcaagctgctggcgttatcgaatctcgaggtggaaaccttcatcggc
gaggcgctcgaagccaatccactgttggagattggcgagccttctccaacagaaccggtg
gagaccctgcccgaggagctgcggcggacgcatctggaatcctcgccggttgaccagctg
gtctctgaaggtcgggtcgaggaagatcgacctctcgacatcgacgtctcagcgctcgac
cgcgaccgcgacactggcgatgctggcgcattcgagctttcctcctcgcgcgacttatcg
gcaggcggcgaaggcccggatatcgacgagcatggccgctttgatcagacgctggccgag
catctgcatgcacagatcggcgcgatcacttcggacccgcaaatgctgttcgtcgcacgc
tggctgatcgatcagctggacgaggcaggctacatcggcattccacttggcgaaattgcc
gaagcgctcgggctttcactcgtcgtcgtcgaacgcgcattgacgctggtgcagacgctc
gaccccactggcgtcggcgcgcgcaaccttgccgagtgcatcgcgctgcaagccaaggag
gccgatcgctacgatccctgcatggcccggctgatagacaacctggacctcgtcgcgcgc
ggcgagatcgcgcggctcaagcggttgtgccaggtcgacgacgaagatttcgccgacatg
ctggccgagttgcgcagctacgatccccgccccggcctgcgcttcggtggtggcgctgca
gaagccgtcgtgccggacatcctggtgcgcgcgacaagggacgggtggaacatcgcgctc
aaccaggcgaccctgccgcgcctggtggtcaaccgcagctactatgtcgagatgcgaagg
gcctgcatcagcaaggacgccaaggcttggttgggcgacaagctggcggacgccaactgg
ctgctgaaagcgctcgaccagcgtcagaagacgatcctcaaggtggcatcggaactggta
aagcaacaggacggcttcttccggcatggcgtggcgcacttgcgcccgctcacgctcaag
accgtggccgaagcgatctcgatgcacgaatcgactgtcagccgcgtcacctcgaacaag
tacctgcattgcgagcgtggcacattcgagctgaagtatttcttcacatccggcgtaggc
tcttcggacggcgaaggcgcttcggccgaagcggtcaaggccgcgatccggcaactgatc
gatgccgaagatcccaaggcgatcctttcggacgatgcccttgtcgatctcttgaaagcc
aagggtttcgacctcgcccggcgcaccgtggcgaagtatcgcgaggcaattgggctcggc
agttcggtgcaacggcggcgccagaaagcgctggcggcggtccgctag
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