Novosphingobium sp. ES2-1: IM701_14715
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Entry
IM701_14715 CDS
T10689
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
novo Novosphingobium sp. ES2-1
Pathway
novo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
novo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IM701_14715 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
novo03021
]
IM701_14715 (rpoC)
03400 DNA repair and recombination proteins [BR:
novo03400
]
IM701_14715 (rpoC)
Enzymes [BR:
novo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IM701_14715 (rpoC)
Transcription machinery [BR:
novo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IM701_14715 (rpoC)
DNA repair and recombination proteins [BR:
novo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IM701_14715 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
YqfD
Motif
Other DBs
NCBI-ProteinID:
QOV93807
LinkDB
All DBs
Position
complement(3007456..3011739)
Genome browser
AA seq
1427 aa
AA seq
DB search
MNDLTKFTNQLAKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVIEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKHMLMNLDLEQERDDLMEELRTTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMDRAGEPGEGMMLADMAEVHQALEA
KAVTLHSKIIARVPQTDENGKQYLKRFETTPGRMLIGECLPKSHKVPFEIVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRNAFKAGISFGKDDMIIPDSKDALVAETKELV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMEELKSSPVDEATGRQKPINAIYM
MSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVIEEDCGTERALEMRAIVQGGSTIASLGERILGRTL
AEDLIEAKSGEVIAQKGELLDEAAIAKIEAAGVQSAKIRSPLVCEAQQGVCGTCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSHLEAISDGTVVYRDIPT
ITDKRGRRLSLARNGEIVVMDTEGRERAIHRVPYGTHLLHENGAIISQGDRLAEWDPFTL
PVITEKPGIVRYQDLVDGKTLTEQTDEATGMSSRVVTENRAAGRGKKEDLRPRLTLLDDD
SGEAARYLMAPGTTLSVEDGQRVEAGDILARASREAAKTRDITGGLPRVAELFEARKPKD
NSIIAKIAGRIEFVRDYKAKRKIAIIPEEGEPVEYLVPKSRVIDVQEGDYVKKGDNLISG
SPDPHDILEVMGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITNGGDTT
LLPGEQVDLEEMLETNAKLEEGMQPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTQ
AAVEGKKDSLIGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRASYRKLQESLIAPA
TAAEEHAAELAQGPEAAIGDDPLAAVEGETHGTDADAGDYLIEGDEA
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgaccaaattcaccaaccagctcgccaagcccgagaccttcgaccagatc
cagatcggtctggcgtcgcctgagcgcattcgcagctggtccttcggcgagatcaagaag
ccggaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggccccgtgaaggactacgagtgcctctgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtcaccgtcaccaaggtgcgccgcgag
cgcatgggccatatcgaactggccgcgccggtcgcgcacatctggttcctcaagtcgctg
ccttcgcgcatcggcctgctcctcgacatgcagctcaagcagcttgagcgcatcctctac
ttcgaaagctacgtcgtcatcgagccgggcctgaccccgctcgagaagtaccagctgctg
accgaggacgaactgctcgacgcgcaggacgagtatggcgaagacgccttctcggccggc
atcggtgccgaggccgtcaagcacatgctgatgaacctcgatctcgagcaggagcgcgac
gatctgatggaagagctgcggacgaccaagtccgagctgaagcccaagaagatcatcaag
cgcctcaaggtcgtggaatcgttcatcgattcgggcaatcgtccggaatggatgatcctc
gatgtcgtgccggtcattccgcccgaactgcgcccgctggtgccattggacggtggccgc
ttcgcgacctcggacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctc
aagcgcctgattgagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgttgacgcgctgttcgacaacggtcgccgtggccgcgtgatcactggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggccct
gaactcaagctgcaccagtgcggccttccgaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgcctcgatgccaagggtctgtcgatgaccctgaagcaggccaagaag
tgggtcgagaaggaacgcaaggaagtctgggacatcctcgacgaggtgatccgcgaacac
ccggtgatgctgaaccgggcgccgacgctgcaccgtctcggcatccaggcgttcgagccg
gtcctcatcgaaggcaaggcgatccagctgcacccgctcgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtaccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggtgctgggcatctactatctgtcgatggaccgcgctggc
gagccgggcgaaggcatgatgctggccgacatggccgaagtgcaccaggcgctggaggcc
aaggccgtcacgctgcactcgaagatcatcgcccgcgttccgcagaccgacgagaacggc
aagcagtacctcaagcgtttcgaaacgacgccgggccgcatgctgatcggcgaatgcctg
cccaagagccacaaggttccgttcgagatcgtcaaccgccttctgaccaagaaggaaatc
ggcgacgtgatcgaccaggtctatcgccacaccggccagaaggacacggtgctgttcgcc
gacgccatcatggcgctgggcttccgcaacgcgttcaaggcaggcatctcgttcggcaag
gatgacatgatcatccccgacagcaaggatgcgctggttgccgagaccaaggaactggtt
gccgactacgagcagcagtaccaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggttgcgaatgccatgatggaagagctc
aagagctcgcctgtcgacgaggcgaccggccgtcagaagccgatcaacgcgatctacatg
atgtcgcactcgggcgctcgtggctccccggcgcagatgaagcagcttgcgggcatgcgc
ggcctgatggccaagccctcgggcgagatcatcgaaaccccgatcatttcgaacttcaag
gaaggtctgaccgttcttgaatacttcaactcgacccacggtgctcgtaagggcctcgcg
gacaccgcgctgaagaccgcgaactcgggttacctgacccgtcgtctggtcgacgtgtcg
caggactgcgtcgtgatcgaggaagactgcggcaccgagcgtgcgctggaaatgcgcgcg
atcgtccagggcggttcgacgattgcctcgctgggcgagcgcatccttggccgtaccctt
gccgaagacctgatcgaggcgaagtcgggcgaggtcatcgcgcagaagggcgaactgctc
gacgaagccgcgatcgcgaagatcgaagctgccggcgtgcagtcggccaagatccgctcg
ccgctggtctgcgaagcccagcagggcgtgtgcggcacgtgctatggccgtgaccttgcg
cgcgggacgccggtcaacatcggtgaagctgtcggcgtcatcgccgcgcagtcgatcggt
gagccgggcacccagctgaccatgcgtaccttccacatcggtggcgcggcgcaggtcaac
gagcagtcgcacctcgaggcgatctcggatggtaccgtggtctaccgcgacattccgacg
atcaccgacaagcgcggccgtcgtctgtcgctggctcgcaacggcgaaatcgtggtcatg
gacaccgagggccgtgagcgcgcgatccaccgcgtgccttacggtactcacctgctgcac
gagaacggcgccatcatctcgcagggcgatcgcctggccgagtgggacccgttcaccctg
ccggtgatcaccgaaaagccgggtatcgtgcgctatcaggaccttgtcgacggcaagacc
ctgaccgagcagaccgacgaagccaccggcatgtcgagccgcgtcgtcaccgagaaccgt
gccgccggccggggcaagaaggaggacctgcgtcctcgcctgaccctgctcgacgacgat
tcgggcgaagctgcacgctacctgatggctccgggcaccacgctctcggtcgaggacggc
cagcgcgtcgaagcgggcgacatcctcgcccgtgcatcgcgcgaagccgccaagacccgc
gacatcaccggcggtctgccgcgcgttgccgaactgttcgaggcccgcaagccgaaggac
aattcgatcatcgccaagatcgcagggcgcatcgagttcgtgcgtgactacaaggccaag
cgcaagatcgcgatcatcccggaagagggtgaaccggtcgagtacctcgtgccgaagagc
cgcgtgatcgacgtgcaggaaggcgactacgtcaagaagggcgacaacctgatctcgggc
tcgcccgatccgcacgacattctggaagtgatgggtgtcgaggctctggccgaatacctc
gtcgcggaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcacatc
gaggtgatcgttcgccagatgctgcagaaggtcgagatcaccaacggtggcgacaccacc
ctgctgccgggcgaacaggtcgacctcgaggagatgctcgaaaccaacgccaagctggaa
gagggcatgcagcccgccgaaggcaagccggtgctgctgggcatcaccaaggcctcgctg
cagacgcgctcgttcatctcggccgcgtcgttccaggaaaccacccgcgtgctcacgcag
gcggccgtggaaggcaagaaggactcgctgatcggtctcaaggagaacgtgatcgtcggt
cgtctcatccccgccggtaccggtgcgggcatgaaccgcctgcgcgtcgccgcctcctcg
cgcgatgccgcgctgcgtgcctcctaccgcaagctccaggaatcgctgatcgctccggcg
acggcagccgaagagcatgcagccgagctggcgcaagggccggaagccgcaatcggtgac
gatccgctggcggcggtcgagggcgagacccacggcaccgacgccgatgccggcgattac
ctgatcgagggcgacgaggcgtaa
DBGET
integrated database retrieval system
