Nonomuraea phyllanthi: GBF35_08560
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Entry
GBF35_08560 CDS
T06257
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
now
Nonomuraea phyllanthi
Pathway
now03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
now00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GBF35_08560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
now03021
]
GBF35_08560
03019 Messenger RNA biogenesis [BR:
now03019
]
GBF35_08560
Transcription machinery [BR:
now03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GBF35_08560
Messenger RNA biogenesis [BR:
now03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GBF35_08560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
Spore_III_AA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QFY06736
LinkDB
All DBs
Position
1762407..1764410
Genome browser
AA seq
667 aa
AA seq
DB search
MSDTTELLSDASGAEPASGDTPTRAPAKPRARRSGTGLSAKVLPELQKMAAELGISGTGR
MRKSQLIAAIQEKQGGGAGEGAPASAPAAEAPAAADAAPAAERPTRTRRERSRAKTAEEP
APQPVAQPAEPVVAAPEPVAAAPAEPVVEQQPQAVESGQSETRAERGESRRERRSRGERR
ERGDRSGGDRSGDRGEGGRADGGRDGGRDGGRDGGRDQQRERAADSGGRGDRGDRGDRGD
RDQRGDRDQQRGGDDDERGGRSRRGRFRERNRGRGRDRFEGGEPVIGDDDVLIPIAGILD
ILDNYAFVRTSGYLPGSNDVYVSLAQIRRNGLRKGDVITGAVRQPREGERREKFNALVRL
DTVNGMDPEQARNRPDFNKLTPLYPQERLRLETEPNILTTRIIDLVSPIGKGQRGLIVSP
PKAGKTMVLQSIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIHSTFDRPAEDH
TTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKR
FFGAARNIENGGSLTILATALVETGSKMDEVIFEEFKGTGNMELKLNRSLADKRIFPAVD
VDASGTRKEEILMAKEELQIVWKLRRVLHALDMQQALELLLEKMKETKSNAEFLMQVQKT
TVSNDRD
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacaccaccgaactcctctccgacgcatcaggcgcagagccggcgtccggcgac
acccccactcgcgctccggccaagccgcgtgcgcgtcgctccggcaccggcctgtccgcc
aaggtgctgcccgagttgcagaagatggcagcggagctgggcatcagcgggaccgggcgc
atgcggaagagccagctcatcgcggccatccaggagaagcagggtggcggcgcgggcgaa
ggcgcaccggcttcggccccggcggccgaggctcccgccgctgcggacgcggctcccgcc
gccgagcggcccacccgtacccgtagggaacgttcccgcgccaagaccgcggaagagccc
gcgccgcagcccgtcgcgcagccggcggagcccgtggtggcggctcccgagccggtcgcc
gccgctccggcggagcccgtcgtggagcagcagccgcaggccgtggagagcgggcagagc
gagacgcgcgccgagcgcggcgagagccgccgcgagcgccgcagccgtggcgagcgccgc
gagcggggagaccgctccggcggcgaccgctcgggcgaccggggcgagggcggccgcgcg
gacggcggccgtgacggtggtcgcgacggcggtcgtgacggcggtcgtgaccagcagcgc
gagcgcgccgccgactccggcgggcgcggtgaccgcggtgaccgcggcgaccgtggcgac
cgcgaccagcgtggcgaccgcgaccagcagcgcggcggcgacgacgacgagcgcggcggg
cgcagccgcaggggccggttcagggagcgcaaccgcggccgtggccgcgaccgcttcgag
ggcggcgagcccgtcatcggcgacgacgacgtgctcatcccgatcgccggcatcctcgac
atcctcgacaactacgcgttcgtcaggaccagtggctacctgccgggcagcaacgacgtc
tacgtctcgctcgcccagatccgccgcaacggcctgcgcaagggcgacgtcatcaccggc
gccgtccgccagccccgcgagggcgagcggcgcgagaagttcaacgccctggtccgcctc
gacaccgtcaacggcatggacccggagcaggcccgcaacaggcccgacttcaacaagctg
acgccgctctacccgcaggagcgcctgcgcctcgagaccgagcccaacatcctcaccacg
cggatcatcgatctcgtctcgccgatcggcaagggccagcgcggcctcatcgtctcgccg
cccaaggccggtaagacgatggtgctgcagtccatcgccaacgcgatcacccgcaacaac
cccgagtgccacctgatggtcgtgctcgtggacgagcggcctgaagaggtcaccgacatg
cagcggtcggtcaagggcgaggtcatccactcgaccttcgaccgtcccgccgaggaccac
accacggtcgccgagctcgccatcgagcgggccaagcgcctggtggagctcggccacgac
gtggtcgtcctgctcgactcgatcacccgcctcggccgcgcctacaacttggcggccccg
gcgtccgggcgcatcctgtcgggtggtgtcgactccacggcgctctacccgcccaagcgg
ttcttcggcgccgcgcgcaacatcgagaacggcggctccctcaccatcctggccacggcc
ctcgtcgagaccgggtccaagatggacgaggtcatcttcgaggagttcaagggcaccggc
aacatggagctcaagctcaaccggtccctggccgacaagcggatcttccccgcggtggac
gtcgacgcgtccggcacccgtaaggaagagatcctcatggccaaggaagagctccagatc
gtctggaagctgcggcgggtgctgcacgctctggacatgcagcaggcgctggagctgctg
ctggagaagatgaaggagaccaagtccaacgcggagttcctcatgcaggtccagaagacc
acggtgagcaacgaccgcgactag
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