Nonomuraea phyllanthi: GBF35_17490
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Entry
GBF35_17490 CDS
T06257
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
now
Nonomuraea phyllanthi
Pathway
now03030
DNA replication
now03430
Mismatch repair
now03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
now00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GBF35_17490
03430 Mismatch repair
GBF35_17490
03440 Homologous recombination
GBF35_17490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
now03032
]
GBF35_17490
03400 DNA repair and recombination proteins [BR:
now03400
]
GBF35_17490
Enzymes [BR:
now01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GBF35_17490
DNA replication proteins [BR:
now03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GBF35_17490
DNA repair and recombination proteins [BR:
now03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GBF35_17490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
Rv2179c-like
RNase_H_2
DEDDh_C
UVR
Ferritin
Motif
Other DBs
NCBI-ProteinID:
QFY08231
LinkDB
All DBs
Position
complement(3815184..3816908)
Genome browser
AA seq
574 aa
AA seq
DB search
MDAVQGTLDELGTPLSDVTFVVFDLETTGGAPSDDAITEIGAVKVRAGEVLGEFSTLVDP
GGPIPPFISVLTGITDAMVVAAPRIEAVLPSFLEFIRGATLVAHNAGFDTRFVKAACAAH
GYPPPANPVVDTVDLARRVLTRDETPNAKLSTLARFFRSATEPCHRALADARATVDVLHG
LIERAGSFQVHTLEELKSFVRAPTPEQQRKRHLADSVPHAPGVYFFEDERGEVLYIGKST
NLRNRVRSYFTAGETRPRIREMIGIAERVRHIVCSTALEAEVRELRLIGGAKPRYNRRSR
FPEKVVWLKLTTEAFPRLSIVRDLKDDGATYLGPFTSARLADEARIALHEAVPLRQCTQP
VTLRTRRAACVLHEMGRCGAPCEGRESPEEYALHVESARRAMTLDASPVFTAVSARMERL
SVEQRYEEASIDRDRLASFVRTAARMQRLSAITRIPQLVAASPAFGGGWDIHVIRYGRLA
AAGVMPKGAHPTPFVASLTATAEAVIPGPGPVHAASAEETECILRWLESPGVRLVEVDGE
WSLPAHGAARHKARIDLAYQRFDQRRDREGRPLR
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtggacgcggttcaaggcactctcgacgagctcggcactccgctgagcgacgtcacgttc
gtcgtgttcgacctcgagacgaccggcggcgccccgtccgacgacgccatcaccgagatc
ggcgcggtgaaggtcagggcgggcgaggtgctgggcgagttctccacgctggtcgatccc
ggggggccgatcccgccgttcatctccgtgctgaccggcatcaccgacgccatggtcgtg
gccgcgccgcggatcgaggcggtcctgccgagcttcctggagttcatccgcggcgccacg
ctggtggcgcacaacgccggtttcgacacccgtttcgtcaaggcggcctgcgccgcccac
ggctatcccccaccggccaacccggtggtcgacaccgtcgacctggcccgccgcgtgctg
acccgcgacgagacccccaacgccaagctctcgacgctggccaggttcttccgcagcgcc
accgagccgtgccaccgcgccctggcggacgccagggccacggtcgacgtgctccacggc
ctgatcgagcgggccggctcgttccaggtgcacacgctggaggagctcaagtcgttcgtc
cgcgcccccacgcccgagcagcagcgcaagcgccacctggccgactccgtcccgcacgcc
ccgggggtctacttcttcgaggacgagcgcggcgaggtcctctacatcggcaagagcacc
aacctgcgcaaccgggtgcgctcctacttcacggccggcgagacccggccgcgcatccgc
gagatgatcggcatcgccgagcgggtgcgccacatcgtctgctcgaccgccctggaggcg
gaggtcagggagctgcgcctgatcggcggcgccaagccccgctacaaccgccgctcccgc
ttccccgagaaggtggtctggctcaagctcaccaccgaggcgttcccgcgcctgtcgatc
gtccgcgacctcaaggacgacggggccacctacctcggcccgttcaccagcgcccgcctg
gccgacgaggcccgcatcgcgctccacgaggcggtcccgctgcgccagtgcacccagccg
gtcacgctgcgcacccggcgggcggcctgcgtgctgcacgagatgggccgctgcggcgct
ccctgcgagggcagggagagcccggaggagtacgcgctgcacgtggagagcgcgcgccgg
gccatgacgctcgacgcctcgccggtcttcaccgccgtctcggcccgcatggagcggctg
tcggtggagcagcgctacgaggaggcgtcgatcgaccgcgaccggctggcgtccttcgtc
cgcacggcggcccgcatgcagcggctgagcgccatcacccgcatcccgcagctggtggcc
gccagcccggccttcggcgggggctgggacatccacgtcatccggtacgggcggctcgcg
gcggccggcgtcatgccgaaaggcgcccacccgacccctttcgtggcctccctcacggcc
accgccgaggccgtcatccccggccccggccccgtccacgccgccagcgccgaggagacc
gagtgcatcctgcgctggctggagtcacccggggtgcggctggtggaggtcgacggcgag
tggagcctgccggcccacggggccgcccgccacaaggcccgcatcgacctcgcctaccag
cgcttcgatcaacgccgtgatcgggaggggcgacctttgaggtga
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