Nitrosopumilus oxyclinae: C5F49_01840
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Entry
C5F49_01840 CDS
T06689
Symbol
rpoA1
Name
(GenBank) DNA-directed RNA polymerase subunit A'
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
nox
Nitrosopumilus oxyclinae
Pathway
nox03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nox00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C5F49_01840 (rpoA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nox03021
]
C5F49_01840 (rpoA1)
Enzymes [BR:
nox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C5F49_01840 (rpoA1)
Transcription machinery [BR:
nox03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
C5F49_01840 (rpoA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QLH04189
UniProt:
A0A7D5M5K5
LinkDB
All DBs
Position
324479..328282
Genome browser
AA seq
1267 aa
AA seq
DB search
MSVQAIKAIDGIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQK
CLTCGNTAARCPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQDDLNAFQKI
KDKHAAYTVVSQKRIPEQIIEKAKKAKECPHCGKTQYELVFTKPTIFVEKTEIGEHRLLP
ITIRERFTQILDEDLTLLNYDPITARPEWFILQALPVPPVTVRPSIILETGIRSEDDLTH
KMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHSTTYFDNEVSGIPQAHHRSGRPLKT
LTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEQVAMKLTIPEIVTEWN
IERMRKLVINGPEQFPGVNYIVRPDGVKIRLDFVEDRSTIAETLEIGYLIERHLADGDIV
MFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAI
LLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTTLSVQEFSNYAMLGGYTDALPKP
GTKTKDGPAYTGKQLFSLFLPKDFNYVLTSKWSKGTKGPEKDVVIKNGELISGVIDKTSI
GAEEPESVLHRITKDYGNAAGKTFLNSILIMVKQFITHYGFSYGYGDLEVPEKNVQQILD
EIKETYDTVADLTDQYNKGTLKLTRGMKAEEALEAYIVNELGKAREKAGATANDSLDDNN
AGKIMATTGARGSALNVGQMAGALGQQSRRGNRMSFGYSNRALTHYLENDSNPDAHGFVK
SNYRTGLTALEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHG
HIVQFLYGEDGIDVQKSDHGEAFNASRLAESQTIIDSGKKATKDEIDTLAKKYTKIFNPR
LTQLVTDALQKSNLSKEGVEAVCKKGLSLYKNAQVEPGQAVGIVTAQSIGEPGTQMTLRT
FHFAGIKERNVTLGLPRLIELVDARKKPVTPTMDIYLDKESKNSREKAIEVARNVLQTNV
SALIANTETDYSTNIKLIMSPNRLKERGCSMAEVEAALSSNKKFKMEVTGELITLNLVDE
ADTASAIAIRNKVLKTIVKGVPDVERVTLVQKNDEWIIQTTGSNIAKVLAVKGIDKRNVR
TNNVFEIAGTLGIEAARNSLINELNHTLGDQGLEVDNRYIMLVSDLMCSRGYMQQIGRHG
IAGTKDSVLARAAFEITVPTIAHAALQGEVEQLKGITENVIVGSNIPIGSGTVDLYMQVS
KKNKKTE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttcaagcaattaaagcaattgacggaattcgattttcagtatggtctccaact
gaaattagaaaatattcagtagctgaaatcactgcccctgaaacatacgatgaagatgga
atgccagtacaagggggtcttatggatggacgattaggaacacttgagcctggacaaaaa
tgtcttacatgtggaaatactgcagcaagatgtcctggacactttggacacattgaactt
gcagaaccaattttacacattgcctttattgataatatttacaaattattacaatccaca
tgtcgttcttgtgcaagactcaaagtccctcaagatgatctaaatgcattccagaaaatt
aaagataaacacgcagcatacactgtagtttcacaaaaacgtattccagaacaaattatt
gaaaaagcaaagaaagcaaaagagtgccctcattgtggaaaaacccaatacgagctagtc
tttacaaaaccaacaatctttgtagaaaaaactgaaattggtgaacacagattattacca
attacaattagagaaagatttacacaaattcttgatgaagatttaacattactaaattat
gatccaatcactgcaagaccagaatggtttattcttcaagcattacctgttcctccagta
actgttagaccttcaattattcttgaaactggaattcgttctgaagatgacttgacacac
aaaatggtagatatcatcagagttaatcaaagactaaaggaaagtaaagaagcaggtact
cctccgttaattgttcaagatttagttgacctgttacaatatcactctacaacatacttt
gataatgaggtctctggaattccacaagctcatcatcgttctggacgtccactcaaaact
ttaactcaaagactaaagggtaaagagggaagatttagaggatcactgtctggaaagaga
gtcgatttttctagtagaactgtaatttcacctgatcctaacttggatttgtctgaagtt
ggagttcctgaacaagttgcaatgaaacttactattcctgaaattgtcactgaatggaat
attgaaagaatgagaaaattagtaattaacggacctgaacaattccctggtgtaaactat
attgtaagaccagacggtgtaaagattagattagatttcgtagaagaccgctctactatt
gctgaaacccttgagattggatatttgattgaaagacatcttgcagacggtgatattgtc
atgtttaacagacaaccatcactccaccagatgtcaattatggctcactatgtgagagta
cttccaggtaaaacattcagattacacccatctgtatgtccgccatacaacgcagacttt
gatggtgatgagatgaaccttcacgtacctcaaagtgaggaagcaagagcagaagcaatt
cttttgatgagagttcaagatcaattaatctctccaagatatggtggtccaattattggg
gcactaagagactttgtaactggtgcatatcttctaactaaagacgatactacattatcc
gttcaagaattttcaaactatgcaatgcttggtggttatactgatgcacttccaaaacct
ggtaccaaaacaaaagatggtcctgcatatactggtaaacaactattctcattattcctt
ccaaaagacttcaactatgttcttacttcaaaatggtcaaagggaacaaaaggtccagaa
aaagatgttgtaattaaaaacggtgaattaatcagcggtgtaattgacaaaacatcaatc
ggtgcagaagaacctgaaagtgtcttacacagaattacaaaagactatggaaatgcagct
ggtaagactttcttaaactctattctaattatggtaaaacaattcatcacacactatgga
ttcagttatggttatggtgatcttgaagtaccagaaaagaatgtgcaacaaatcttagat
gaaatcaaagaaacttatgatactgtagctgacctaactgatcaatataacaaaggaact
ctaaagctaacaagaggtatgaaggctgaagaggccttagaggcatacatcgtcaatgag
ctaggtaaagcaagagagaaagcaggagctactgcaaatgattctctagatgataataac
gctggaaaaatcatggccacaactggtgccagaggttcagcacttaacgtaggtcagatg
gcaggtgcattaggccaacaatcaagacgaggaaatagaatgagttttggttatagtaat
cgtgcattaacacattatttagaaaatgatagtaatcctgatgcacatggatttgtaaaa
tcaaattacagaacaggtcttacagctttagaattcttcttccacgcaatgggtgggcgt
gaaggattagtagatactgcagttagaacccaacaaagtggttacatgcagcgtagattg
attaacgcattagagcacattagattagaatatgatggaaccgtaagagacccacacgga
cacatcgttcaattcctttatggtgaagatggaattgatgtgcagaaaagtgatcatggt
gaggcatttaatgcaagtagattggcagaatctcaaaccattattgattctggaaagaaa
gcaaccaaagatgaaattgatacattggctaaaaaatacacaaagatattcaatccaaga
ttaactcaacttgtaactgatgctttacagaaatctaacttgagtaaagaaggtgttgaa
gcagtatgtaagaaaggactttccctttacaaaaatgcacaagttgaacctggtcaagca
gtaggaattgtcacggcacaatctattggtgaacctggtactcagatgactttgagaaca
ttccactttgcaggaattaaagaaagaaacgtaactttgggtcttccaagattaattgaa
ttagttgatgctagaaagaaaccagttactccaactatggatatctatcttgacaaggaa
tcaaagaattctcgagaaaaagcaatcgaagttgcacgaaacgtattgcaaactaacgtc
agtgcattgattgctaatactgaaactgattactctacaaatatcaaattaatcatgagt
cctaacagactaaaagagagaggatgttcgatggccgaagtagaagccgcactttcatct
aataagaaattcaagatggaagttacaggcgaattaatcactttgaatttggtagatgag
gcagatactgcatctgcaattgcaattagaaataaagttctcaagactattgttaaagga
gttccagatgttgagcgagttacacttgttcaaaagaatgatgaatggattattcagaca
actggttcaaacattgctaaagtacttgcagtaaaaggcattgacaaaagaaatgttaga
acaaacaatgtctttgaaattgcaggaaccttgggaattgaggctgccagaaattcatta
atcaatgaacttaaccatactttgggtgaccagggattagaagttgataatcgatacatc
atgttggtatctgacttgatgtgttctagaggttacatgcaacaaattggtagacatgga
attgcaggtactaaagatagtgttcttgcaagggccgcattcgaaattacagtcccaaca
attgcacatgctgcactacagggtgaagttgaacaactcaaaggtattacagaaaacgtt
attgttggaagtaatattccaattggaagtggtactgttgacttgtacatgcaagtaagc
aagaaaaacaagaaaactgagtaa
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integrated database retrieval system
