Nitrosopumilus oxyclinae: C5F49_03120
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Entry
C5F49_03120 CDS
T06689
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
nox
Nitrosopumilus oxyclinae
Pathway
nox03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nox00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
C5F49_03120 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nox03021
]
C5F49_03120 (tfb)
Transcription machinery [BR:
nox03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
C5F49_03120 (tfb)
Prokaryotic type
Archaeal type
TFB
C5F49_03120 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
GntR
Cyclin_N
HTH_11
Zn_ribbon_tTFIIB
DivIVA
Baculo_ME53
DZR
HTH_36
TnsD
Motif
Other DBs
NCBI-ProteinID:
QLH04417
UniProt:
A0A7D5R340
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All DBs
Position
complement(546989..547918)
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AA seq
309 aa
AA seq
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MTTVQVVKKTKIFCDYCHASKFVTDQVIGETICSSCGFVISENAEDRGAERRLISDTADT
ARTGPGLSLKMHDKGLNTRIGAQNKDAVGKPLSGKTTQMFDRLRKWDSRSQTKNSAERNL
RFALIEFDKVQSKLGLSDTVVERASLFYRKAIERNIIRGRTVKSIAAACLYASCRDLEHH
RSLTEIADQFVIKRKEIARAYRILFRELEFTVSVVDPIKSISKIASKIGTSEKTIRKATQ
ILTAAQDAGIIAGKNPEIVAATAVYAACVITGESKSQTEIAAAANTSTVSIRNRIQEFKT
KLDLFGTLS
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
ttgaccacagttcaagtagttaaaaaaacaaaaatattttgcgattattgtcatgcctca
aaatttgtaactgaccaagttattggagaaactatctgctctagttgtggatttgttatt
tcagaaaatgccgaagatagaggagcagagcgcagactaatttcagatactgcagatact
gccagaacaggtcccggactatcactgaaaatgcacgacaagggcctcaatacaagaatt
ggagcacaaaacaaggatgcagttggaaagccactctcgggtaaaaccactcagatgttt
gacagattacgaaaatgggatagcagatcacagacaaaaaactcagcagaaaggaatctc
agatttgcactaatagaatttgataaagtacagtcaaaattaggcctctcagatacagta
gttgagcgcgcatcactattttacagaaaggcaattgagagaaacattattcgtggtaga
actgtaaaatccattgcagcagcatgtttgtatgcctcatgtcgagatttagagcaccac
aggtctctaactgagattgcagatcaatttgtaattaaaagaaaagagatagcacgtgca
tacagaatattgtttagagaattagaatttactgtgtctgtagttgatccaataaaatca
attagtaaaattgcaagtaagataggaacatctgaaaaaacaattcgtaaagcaacacaa
attttaactgcagcccaagatgcaggaatcatagctggtaaaaatccagaaatcgtggca
gccactgcagtttatgcagcatgtgtgattacaggagaatcaaaatctcaaacagaaatt
gcagcagctgcaaataccagcacagtttcaataagaaatagaattcaagaatttaaaaca
aaattggatttgtttggcacattaagttaa
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