KEGG   Nitrosopumilus oxyclinae: C5F49_03980
Entry
C5F49_03980       CDS       T06689                                 
Name
(GenBank) DNA-directed RNA polymerase subunit K
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
nox  Nitrosopumilus oxyclinae
Pathway
nox03020  RNA polymerase
nox03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nox00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    C5F49_03980
  09124 Replication and repair
   03420 Nucleotide excision repair
    C5F49_03980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nox03021]
    C5F49_03980
   03400 DNA repair and recombination proteins [BR:nox03400]
    C5F49_03980
Transcription machinery [BR:nox03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     C5F49_03980
  RNA polymerase III system
   RNA polymerase III
     C5F49_03980
  RNA polymerase I system
   RNA polymerase I
     C5F49_03980
DNA repair and recombination proteins [BR:nox03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      C5F49_03980
SSDB
Motif
Pfam: RNA_pol_Rpb6 Herpes_UL14 ATR1_N YqzH
Other DBs
NCBI-ProteinID: QLH04568
UniProt: A0A7D5M548
LinkDB
Position
complement(706273..706764)
AA seq 163 aa
MSDVNETELIEAPQPEELDEEVEENAGLNKALDTYRKLIDRKDLVEPLTEKEQDSLEKRI
KEIENREVVERIEEHEPVEIPCEKNKITIGPPTLTRFEKARIMGARALQLSLGAPPFIPI
PKSARISLDISMEELEQRVIPITIRRVLPNGDYQNIPIDYFEK
NT seq 492 nt   +upstreamnt  +downstreamnt
ttgtctgatgttaatgaaactgaattaattgaagctccacaacctgaagaattagatgaa
gaggttgaggagaatgcagggttaaacaaagcattagatacatatcgaaaattaatagat
agaaaagatcttgttgaaccattaactgaaaaagaacaagatagtcttgaaaaaagaatc
aaagaaattgaaaacagagaagttgttgaaagaattgaagaacatgaaccagtagaaatt
ccttgtgagaagaataaaattacaatcggaccaccgacattgacaagatttgaaaaggca
agaatcatgggagcaagagcattacaattatcattaggggcaccaccatttatcccaatt
ccaaaatcagcaagaatttcactagatatctcaatggaagaattagaacaaagagtaatc
ccaattacaattagacgtgtacttccaaacggagattatcaaaacataccaattgattat
tttgagaaataa

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