Nitrosopumilus oxyclinae: C5F49_07540
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Entry
C5F49_07540 CDS
T06689
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nox
Nitrosopumilus oxyclinae
Brite
KEGG Orthology (KO) [BR:
nox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nox03016
]
C5F49_07540
Enzymes [BR:
nox01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C5F49_07540
Transfer RNA biogenesis [BR:
nox03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C5F49_07540
Prokaryotic type
tRNA splicing ligases
C5F49_07540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
GAPS4b_N
DUF3983
Motif
Other DBs
NCBI-ProteinID:
QLH05190
UniProt:
A0A7D5M5N9
LinkDB
All DBs
Position
complement(1299532..1300980)
Genome browser
AA seq
482 aa
AA seq
DB search
MSSSTPRKIGENQYQIDADSNLGMKVPVRIYADEPLMQKMLSDRTIMQAKNVACIPGIVS
HSTVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRSNLSEDLVRSKLKE
LVTDLFSSIPSGVGSKGAVKLTPSELDEVLVRGVDWAIDHGYGSSDDSDVCEENGKIQNA
DPDKVSDKARKRGAPQLGSLGSGNHFLEVQKVAEIHDEEAAKRMGIEEGTITVLIHCGSR
GFGHQVCSDYLRVAEQAMEKYNINLPDRELACVPNSSEEGESYRKAMFSALNFAWSNRQM
LTHWTRNSFQRVFNQSESDLDMKLVYDVAHNIAKVEKHKVDGAERNLVVHRKGATRAFPA
NRNEIPLKYRDLGQPVLVPGSMGTSSWILLGKPNSMNLSFGSTAHGAGRTMSRSKARRNF
TEDDVKKSLNDKGIFIKALTRDGVVEETPQAYKDVDSVVNVSHNLGIATKVAKLVPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctagtacaccaagaaaaattggagagaaccaataccaaattgatgctgattca
aatcttggcatgaaagttcctgtgagaatctatgctgatgagccattaatgcaaaaaatg
ctctctgataggacaataatgcaggcaaaaaatgtagcctgtattcctggtatagttagt
catagtacagttttacctgacgggcatgaaggctatggttttccagtaggtggggtcgca
gctatggatgcagaagaaggaatgattagtcctggaggtgttggttatgatattaattgt
ggagtacgtttacttcgttctaatttatctgaagatttagttcgttcaaaactaaaagaa
ttggtaacagatctttttagctctataccatctggtgtaggatctaaaggtgcagtaaaa
ctaactccttcggaacttgatgaagttttggtaagaggagtggactgggcaattgatcat
ggttatggctcatctgatgattcagatgtttgtgaagagaatggaaaaattcaaaatgct
gatccagacaaagtttctgataaagcaagaaaaagaggtgcacctcaacttggaagttta
ggttctggaaatcattttttagaagtacaaaaagttgcagaaattcatgatgaagaagca
gcaaagagaatgggaatagaagaaggaacaattacagttttaattcattgtggctctaga
ggatttggtcatcaggtgtgtagtgattatctccgagtggcagagcaagctatggaaaaa
tataatatcaatttacctgatagagaacttgcatgtgtcccaaatagttctgaagaaggt
gaatcttatagaaaagcaatgttttctgcattaaattttgcttggagtaatagacaaatg
ctaactcattggacgagaaattcttttcaacgtgtatttaatcaatcagagtctgatctt
gatatgaaactagtttatgatgttgctcataatattgctaaagttgaaaaacacaaagtt
gatggagcagaacgtaatttggtagttcatagaaaaggtgcaacaagagcgtttcctgca
aatcgaaatgaaattccgttaaaataccgtgatttaggacaacctgttttagttccaggc
tctatgggtacttctagctggattttacttgggaaaccaaattcaatgaatttgagtttt
ggatctactgctcatggtgcaggaagaacaatgtctcgttcaaaggctagaagaaatttt
actgaggatgatgttaaaaaatcactaaatgacaaaggcatattcatcaaagccttaact
agagatggagttgttgaagaaacccctcaagcctacaaagatgttgattctgtagttaat
gtctctcataatttgggaattgccacaaaagttgcaaaattagtgcctattggtgtgatt
aaaggttga
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