Nocardioides euryhalodurans: EXE57_00875
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Entry
EXE57_00875 CDS
T05931
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
noy
Nocardioides euryhalodurans
Pathway
noy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXE57_00875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noy03019
]
EXE57_00875
03009 Ribosome biogenesis [BR:
noy03009
]
EXE57_00875
Enzymes [BR:
noy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EXE57_00875
Messenger RNA biogenesis [BR:
noy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXE57_00875
Ribosome biogenesis [BR:
noy03009
]
Prokaryotic type
rRNA helicases
EXE57_00875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
UvrA_inter
CMS1
HEM4
AIRS_C
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QBR90980
UniProt:
A0A4P7GGJ6
LinkDB
All DBs
Position
193314..195032
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AA seq
572 aa
AA seq
DB search
MSDEVREQEQGVTFGDLGLDPRVLEAVREVGYETPSPIQAATIPTLLEGRDLVGLAQTGT
GKTAAFALPILSRLDLKQKTPQALVLAPTRELALQVCEAFERYAAHVPGIHVLPVYGGQG
YGVQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSELRFLVLDEADEMLNMGFAEDVETIL
ADTPTDKNVALFSATMPAQIRRISKKYLNDPAEITVKNKTATATNITQRYLTVSYPQKVD
ALTRILEVENFEGMIVFVRTKNETETLAEKLRARGFSAAAINGDVVQAQRERTIGQLKDA
KLDILVATDVAARGLDVERISHVVNYDIPTDPESYVHRIGRTGRAGRSGDAISFVTPRER
YLLKSIEKTTRQPLTQMQLPTVDDVNVTRLARFDDAITEALSATERVSFFRDVVSHYIRE
HDVPEVDVAAALAVVLQGDTPLLLDPEPVRPPRRERADQPGRGDRPERGGKRPPRHGDGP
PMATYRIAVGKRHKVEPRQIVGALANEGGLSRRDFGNISIRPDFSLVELPAELPPGTEEA
LASTRISGKLIGLRKDAGPRQSRPKQGKPPRD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgaggtgcgcgagcaagagcagggggtcaccttcggtgacctcgggctggat
ccccgagtcctcgaggcggtgcgcgaggtcggctacgagaccccgtcgccgatccaggcg
gcgaccatcccgacgctcctcgaggggcgcgacctcgtcggcctggcccagaccggcacc
ggcaagaccgccgcgttcgcgctgccgatcctctcgcgcctcgacctcaagcagaagacg
ccccaggcgctcgtgctggcgcccacccgtgagctcgcgctccaggtctgcgaagccttc
gagcggtacgccgcccacgtccccggcatccacgtgctgccggtctacggcggccagggc
tacggcgtccagctcagcgcgctgcgccgcggcgtccacgtcgtcgtgggcacccccggg
cggatcatggaccacctcgacaagggcacgctcgacctgagcgagctgcggttcctggtg
ctcgacgaggccgacgagatgctcaacatgggcttcgccgaggacgtcgagacgatcctc
gccgacacgccgaccgacaagaacgtcgcgctgttctcggccacgatgccggcgcagatc
aggcggatctcgaagaagtacctgaacgacccggccgagatcacggtcaagaacaagacc
gcgaccgccaccaacatcacccagcgctacctcacggtgtcctacccccagaaggtcgac
gccctcacccggatcctcgaggtcgagaacttcgaggggatgatcgtcttcgtccggacc
aagaacgagaccgagacgctcgcggagaagctccgcgcccgcggcttctcggccgccgcc
atcaacggcgacgtcgtgcaggcccagcgcgaacggaccatcggccagctcaaggacgcc
aagctcgacatcctggtcgccaccgacgtggccgcgcgcgggctcgacgtcgagcggatc
agccacgtcgtcaactacgacatcccgaccgaccccgagtcctacgtgcaccggatcggc
cggaccggccgcgccgggcgcagcggcgacgcgatctccttcgtcacgccccgcgagcgc
tacctgctgaagtcgatcgagaagaccacccgtcagccgctgacccagatgcagctgccg
accgtcgacgacgtcaacgtcaccaggctggcccgcttcgacgacgccatcaccgaggcg
ctctccgccaccgagcgggtctcgttcttccgcgacgtcgtgtcgcactacatccgtgag
cacgacgtccccgaggtcgacgtggccgcggcgctcgcggtcgtgctccagggcgacacg
cccctgctgctggaccccgagcccgtacgcccgccccggcgcgagcgcgccgaccagccg
ggccgtggcgaccgccccgagcggggtgggaagcgcccgccgaggcacggggacggaccg
ccgatggcgacctaccggatcgcggtcggcaagcgccacaaggtggagccgcgccagatc
gtcggcgcgctcgccaacgagggcggcctgagccgacgcgacttcggcaacatctcgatc
cgccccgacttctcgctcgtcgagctccccgccgagctgcccccgggcaccgaggaggcg
ctcgcgtcgacgcggatctccggcaagctcatcggcctgcgcaaggacgccgggccgcgg
cagagccgccccaagcagggcaagccgccccgcgactag
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