Nocardioides euryhalodurans: EXE57_07900
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Entry
EXE57_07900 CDS
T05931
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
noy
Nocardioides euryhalodurans
Brite
KEGG Orthology (KO) [BR:
noy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noy03019
]
EXE57_07900 (hrpA)
Enzymes [BR:
noy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EXE57_07900 (hrpA)
Messenger RNA biogenesis [BR:
noy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EXE57_07900 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
HA2_C
OB_NTP_bind
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
NACHT
AAA_30
nSTAND3
T2SSE
SLFN-g3_helicase
ResIII
SRP54
TsaE
PhoH
NTPase_1
Zeta_toxin
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QBR94379
UniProt:
A0A4P7GQR5
LinkDB
All DBs
Position
complement(1685815..1689570)
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AA seq
1251 aa
AA seq
DB search
MTISYPPELPVTQRREDIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGGDGRLIGH
TQPRRIAARSVAERIAEELGTGLGELVGYQVRFTDRTSKAGRVKVMTDGILLAELQRDRQ
LRKYDTIIIDEAHERSLNIDFLLGYLKRLLPRRPDLKLVITSATIDVDRFAQHFDAPVVE
VSGRTYPVEVRYRPLMELPEDDDEGEVVQRDQTEAIRDAVRELSGEGPGDILVFLPGERE
IRDTADELAGLDRTHHRATALEVVPLYSRLSAAEQHRVFSSHPSSVRRVVLATNVAETSL
TVPGIRYVIDTGVARISRYSSRTKVQRLPVEPISQASANQRSGRCGRVEAGIAIRLYAEE
DFEARPEFTDPEILRTNLASVILQMASLGLGDVARFPFVEPPDRRNVTAGVQLLEELGAL
SSGGGADPRLTRLGKRLARLPIDPRLGRMILEAERLGCLREVIVIAAALSLQDPRERPAE
QRPQADQQHARFTAEASDFLTWLNLWRYVKEQQRELSSSAFRRMCKREFLNYLRVREWQD
FESQLRQVCREMRLDIGQPADVPDADGIHQALLSGVLSHIGALEERAQGRPGERRPMREY
LGARGARFAIFPGSGLKGKNPQFLMAGELVETGRLWARQNAAIKPEWAERLGGHLVKRSY
SEPHWSKKRGSAMAHEKVTLYGVPLVADRLVALGRLDPALARELFVRHALVYAEWPTRHR
FLAENRRLLEEAEELEHRARRRDLVVDEHTLFDFYDARIPAHVVSGAHFDQWWKGERRER
PDLLTFDPAMLTHDTAEEVSEADYPEQWVSEGLTFPISYHFEPGAAEDGLTIDVPVATLN
RVTAEDFSWNVPGLRHELVTSLLRSLPKQLRVSFVPAPNTAREFLATVPPGEEPLLDALE
RHLRGTTGVAVPREAWDWAKVPEHLRPTYRVLDEGGREQARGKDLEVLKEPLRGEFDTAM
AEVAADTTTTGQTRWTFNSLPAEQTWKRAGHEVRGFPALDDEGGSVGLRVCGSPAEAAAR
HRLGVGRLLLLALPQPDLLTGLSNADKLGLAGSPYPSVAELVEDCRRAVVLASVDAQPPA
RDQQAYDALLATTREGLEPRMRELLALVVGVLGRWRTTDKSLAGRADLAVLASLTDMRDQ
LARLVHRGFVSEAGPERLRRYPTYLAALDHRRARLDEQPARDQQLLAQVADLQAAYLHQV
DALPEGRPPSAGLREVRWLLEEYRVSLFAQQLGTTQKVSDQRIRKALAAAT
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atcaccatcagctatccgcccgagctcccggtcacgcagcggcgcgaggacatcgcggcg
gccatccgggaccaccaggtcgtcatcgtcgcgggcgagaccgggtcggggaagaccacc
cagcttccgaagatctgcctcgagctggggcgcggcggcgacggtcggttgatcggtcac
acgcagccgcggcggatcgcggcgcgctcggtggccgaacggatcgccgaggagctcggg
accgggctgggggagctggtcggctaccaggtgcggttcaccgaccggacctcgaaggcc
gggcgggtcaaggtgatgaccgacggcatcctgctggcggagctgcagcgtgaccgccag
ctccggaagtacgacacgatcatcatcgacgaggcccacgagcgcagcctcaacatcgac
ttcctgctcggctacctcaagcggctgctcccgcggcggcccgacctcaagctggtcatc
acctcggcgaccatcgacgtcgaccggttcgcgcagcacttcgacgcgcccgtcgtcgag
gtctcgggcaggacctatcccgtcgaggtccgctaccggccgctcatggagctccccgag
gacgacgacgagggtgaggtcgtccagcgcgaccagaccgaggcgatccgggacgccgtc
cgggagctgtccggggagggaccgggcgacatcctggtgttcctgccgggggagcgggag
atccgcgacaccgccgacgagctcgccggtctcgaccggacccaccaccgggcgacggcg
ctggaggtcgtgcccctctactcccggctctcggccgccgagcagcaccgggtgttctcg
tcccacccgtcgtccgtacgccgggtcgtgctcgccaccaacgtcgccgagacctccttg
accgtccccggcatccgctacgtcatcgacaccggtgtcgcgcggatcagtcgctactcc
tcgcgcaccaaggtgcagcggctcccggtcgaaccgatcagccaggcctcggccaaccag
cgctccggccgctgcggccgcgtggaggccggcatcgcgatccggctctacgccgaggag
gacttcgaggcgcgcccggagttcacggaccccgagatcctgcgcaccaacctcgccagc
gtcatcctgcagatggcctccttggggctcggtgacgtcgcgcggttccccttcgtggag
ccgccggacaggcgcaacgtcaccgcgggcgtccagctgctcgaggagctgggggccctg
tcgtcgggtgggggcgcggatccccggctgacccggctcggcaagcggctggcgcggctc
ccgatcgacccgcgcctcggccggatgatcctcgaggccgaacggctcggctgcctgcgc
gaggtgatcgtgatcgctgcggccctcagcctgcaggacccgcgggagcggccggccgag
cagcggccgcaggccgaccagcagcacgcgcgcttcacggccgaggccagcgacttcctg
acctggctcaacctgtggcgctacgtcaaggagcagcagcgcgagctctcctcgagcgcg
ttccgccggatgtgcaagcgggagttcctcaactacctgcgggtgcgcgagtggcaggac
ttcgagtcgcagctgcgtcaggtctgccgtgagatgcggctcgacatcgggcagccggcc
gacgtgcccgacgccgacggcatccaccaggcgctgctgtcgggggtgctcagccacatc
ggggcgctcgaggagcgcgcccagggccggcccggcgagcggcggccgatgcgggagtac
ctcggcgcgcgcggcgcgcgtttcgcaatcttccccggctccggcctcaaggggaagaac
ccgcagttcctcatggccggcgagctcgtcgagaccggtcgcctctgggcccgccagaac
gccgcgatcaagccggagtgggccgaacggctcggcggacacctcgtcaagcggtcctac
tccgagccgcactggtcgaagaagcgcggatcggcgatggcccacgagaaggtcacgctg
tacggcgtcccgctggtcgccgaccggctcgtcgccctcggccggctcgatcccgcgctc
gcccgcgagctcttcgtccggcacgccctcgtctatgccgagtggccgacccggcaccgg
ttcctcgccgagaaccgccggctgctggaggaggccgaggagctcgagcaccgtgcgcgt
cggcgcgacctcgtggtcgacgagcacaccctcttcgacttctacgacgcccggatccct
gcgcacgtcgtgagcggtgcccacttcgaccagtggtggaagggcgagcggcgcgaacgc
cccgacctgctgaccttcgacccggcgatgctcacccacgacaccgccgaggaggtgagc
gaggccgactaccccgagcagtgggtgagcgaggggctgacctttccgatcagctaccac
ttcgagccgggtgcggcggaggacggcctcacgatcgacgtccccgtcgccaccctcaac
cgggtgaccgccgaggacttctcctggaacgtgcccgggctccggcacgagctggtcacc
agcctcctgcgcagcctgccgaagcagctgcgggtcagcttcgtcccggcccccaacacc
gcgcgagagttcctcgccaccgtgccgccgggggaggagccgctgctcgacgccctcgag
cggcacctgcgcgggacgaccggggtcgcggtcccgcgcgaggcgtgggactgggccaag
gtgcccgagcacctccgaccgacgtaccgggtgctggacgagggcggccgcgagcaggcc
cggggcaaggacctcgaggtgctcaaggagccgctgcggggggagttcgacaccgccatg
gccgaggtcgccgccgacaccacgaccaccggccagacccgctggaccttcaacagcttg
ccggccgagcagacctggaagcgcgccggccacgaggtgcgcggcttccccgcgctcgac
gacgagggcggctcggtcggcctccgcgtctgcggttcgccggccgaggcggccgcgcgg
caccggctgggcgtgggccggctgctgctgctcgccctgccgcagccggacctgctcacg
gggctgtccaacgccgacaagctgggcctcgccgggtctccgtacccctcggtcgccgag
ctcgtcgaggactgccggcgggccgtggtgctggcgtcggtggacgcgcagccgcccgcc
cgcgaccagcaggcctacgacgccctcctcgcgaccacgcgagaggggctcgagccgcgg
atgcgcgagctgctggccctcgtcgtcggcgtgctcggccggtggcgcacgaccgacaag
tcgctcgcaggtcgcgccgacctcgccgtcctggccagcctcaccgacatgcgcgaccag
ctcgctcggctggtccaccgcggtttcgtctccgaggcgggcccggagcggctgcgtcgc
tacccgacctacctggccgcgctcgaccaccggcgcgcgcgactcgacgagcagccggcg
cgcgaccagcagctgctcgcgcaggtggcggacctgcaggcggcgtacctccaccaggtc
gacgcgctccccgagggccgcccaccgtcggcggggctgcgcgaggtccggtggctgctc
gaggagtaccgcgtctcgctcttcgcccagcagctcggcacgacgcagaaggtcagtgac
cagcggatccgcaaggcgctcgccgcggcgacgtag
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