Nocardioides euryhalodurans: EXE57_17925
Help
Entry
EXE57_17925 CDS
T05931
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
noy
Nocardioides euryhalodurans
Pathway
noy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXE57_17925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noy03019
]
EXE57_17925
03009 Ribosome biogenesis [BR:
noy03009
]
EXE57_17925
Enzymes [BR:
noy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EXE57_17925
Messenger RNA biogenesis [BR:
noy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EXE57_17925
Ribosome biogenesis [BR:
noy03009
]
Prokaryotic type
rRNA processing factors
EXE57_17925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QBR93950
UniProt:
A0A4P7GPA4
LinkDB
All DBs
Position
3695159..3698209
Genome browser
AA seq
1016 aa
AA seq
DB search
MLSDTPGEEPTTETPAEPVATPDAADTIPAAAPAKKAAAKRAPAKKTAAKKTTARKTAAK
KTATPPPADAPDEPAAETSAEQAEAPAAPARPAKKAAARRTTKKAAAKPAAEVPAESTEA
AASPEAAAEDGSTAAGTALIFQAPDAAQAPPARRSRAKKKPAEPVADEAPATDESDAPAA
AAEGEGAPVATEPVETEATDEEPDQDAAGDGGSSEGGESAGRRRRRRGGRRRRKPGGEPG
EGNEAGPDDDAGSSDKSGDRDSGRGGSKDTTSSKDDDSSTDAQGDDDGKDAEGGDSPSSR
RRRRRRRAGEDGGDGGDDPRNTVTRVRQTRTAEDQITSLSGSTRLEAKKQRRREGREAGR
RRAPIVSEAEFLARRESVDRVMAIRQRDDLTQIAVLEDKVLVEHYVARESQTSLIGNVYL
GRVQNVLPSMEAAFIDIGKGRNAVLYAGEVNWSALGHKEGQPRKIESVLSSGQSVLVQVT
KDPVGHKGARLTSQVSLAGRFLVYVPDGTNSGISRKLPDTERNRLKTLLKEIVPDGAGVI
VRTAAEGASEEELTRDVERLTARWADIEKAAKGSAPQLLYGEPDLTLKVVRDLFTEDFSK
LAIQGEEAWETVQTYVGQVAPDLQERVSKHDGDGTDLFAAYRIDEQIAKGLDRKVWLPSG
GSLIIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDF
IDMVLESNRDLVLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRIGTGLLEAFSETCTHC
NGRGLITTEVPVEPRRSEEEPRRSRRSRGGRSGRGDGDDNGKQESSSRKGPSPKDVAAMA
RASEAKPEDEPADQQPTDVPEAPAVAQERAEQTEPAEPTQAPKRERARRSGKTTNAEPVE
EQATATEPEASPAEPTATEGDAPSEPTPAPAPEPTAEPTAEPAPPSTPTVVTRTRRRSAS
RPAGPPSSASTPPAAAGSVGAPPVDGIVEPGTADAEPATTPTVEHVPVKKRGSRKR
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgctcagcgacaccccgggcgaggagcccaccaccgagactcccgccgaaccggtggcc
acgcccgacgcggcggacaccatcccggccgccgcgccagcgaagaaggccgccgccaag
cgggcgccggccaagaagaccgccgcgaagaagacgacggcgcgcaagaccgccgccaag
aagacggcgacgccgccgccggccgacgccccggacgaaccggccgccgagacgtcggcc
gagcaggccgaggcacccgccgcgccggccaggccggcgaagaaggccgctgcgcggcgt
acgaccaagaaggcagccgccaagcccgccgccgaggtccccgcggagagcaccgaggcg
gcagcctcgccggaggccgccgccgaggacgggtcgaccgcggccgggaccgcgctgatc
ttccaggcgccggacgccgcgcaggcgccgccggcccgcaggtcccgggcgaagaagaag
cccgccgagccggtcgccgacgaggcgccggccaccgacgagtcggacgcccccgcagcc
gccgcggagggcgagggcgcgcccgtcgcgaccgagccggtcgagaccgaggcgaccgac
gaggagcccgaccaggacgccgcgggggacggcggctcgagcgagggcggcgagtccgcc
ggtcgccgccgccggcgccgtggtggccgccgccgccgcaagccggggggcgagcccggc
gagggcaacgaggccggccccgacgacgacgcgggctcctccgacaagtccggcgaccgc
gactccggccgcggcgggagcaaggacacgacgtcctcgaaggatgacgacagcagcacc
gacgcccagggcgacgacgacggcaaggacgccgagggcggcgacagcccgtcctcacgt
cggcgccggcgccggcgccgcgccggcgaggacgggggcgacggtggggacgacccgcgc
aacaccgtcacgagggtccgccagacccgtacggccgaggaccagatcacctcgctgagc
ggctccacccggctcgaggccaagaagcagcggcgccgcgagggccgcgaggccggccgg
cgccgtgccccgatcgtgagcgaggcggagttcctcgcccgccgcgagtccgtcgaccgg
gtgatggcgatccgccagcgggacgacctcacccagatcgcggtgctcgaggacaaggtc
ctcgtcgagcactacgtcgcccgcgagtcgcagacctcgctgatcggcaacgtctacctc
ggccgggtccagaacgtgctgccctccatggaggctgccttcatcgacatcggcaagggc
cgcaacgccgtgctctacgccggtgaggtgaactggtcggcgctgggccacaaggaaggc
cagccccgcaagatcgagtcggtgctgtcctcgggccagtcggtcctggtgcaggtcacc
aaggacccggtcggccacaagggcgcccgcctcaccagccaggtgagcctcgccggccgc
ttcctggtctacgtccccgacggcaccaacagcggcatctcccgcaagctgcccgacacc
gagcggaaccgcctcaagaccctgctcaaggagatcgtcccggacggcgccggtgtcatc
gtccggacggcggccgagggcgcgagcgaggaggagctgacccgcgacgtcgagcggctc
accgcccgctgggccgacatcgagaaggcggccaagggcagcgccccgcagctcctctac
ggcgagcccgacctcaccctcaaggtggtccgcgacctgttcaccgaggacttctcgaag
ctcgcgatccagggcgaggaggcctgggagaccgtccagacgtacgtcggccaggtcgcc
cccgacctgcaggagcgggtctccaagcacgacggcgacgggaccgacctgttcgcggcg
taccggatcgacgagcagatcgccaagggtctcgaccgcaaggtctggctgccctcgggc
ggctcgctgatcatcgaccggaccgaggcgatgaccgtcgtcgacgtcaacaccggcaag
ttcaccggctccgggggcaacctcgaggagacggtcaccaagaacaacctcgaggcggcc
gaggagatcgtgcgccagctccggctgcgcgacatcggcggcatcatcgtcatcgacttc
atcgacatggtgctggagtccaaccgcgacctcgtgctgcgccggctggtcgagtgcctc
ggccgtgaccgcacccgccaccaggtcgcggaggtcacctctctcggcctggtgcagatg
acgcgcaagcggatcggcacgggcctcctggaggccttctccgagacctgcacgcactgc
aacggccgcggcctgatcaccacggaggtaccggtcgagccgaggaggagcgaggaggag
ccgcggcgctcccgtcggtcccgcggtgggcgcagcgggcgcggcgacggtgacgacaac
ggcaagcaggagtccagctcgcgcaagggcccctcgcccaaggacgtcgccgcgatggcg
cgtgcctccgaggcgaagcccgaggacgagcccgccgaccagcagccgaccgacgtgccg
gaggctcctgccgttgcgcaggagcgggccgagcagaccgagcccgccgagccgacgcag
gccccgaagcgcgagcgtgcccgcaggtccgggaagaccacgaacgcggagccggtcgag
gagcaggcgaccgccacggagcccgaggcgtcgccggccgagccgacggcgaccgagggc
gacgcgccttccgagccgaccccggcacctgcccccgagccgacggccgaacccacggcc
gagccggccccgccgagcacgccgaccgtcgtcacccggacccgccgccgcagcgccagc
cgtccggccggcccaccgagcagcgcctccacgcctcccgcggcggccggttccgtcggg
gcacccccggtggacgggatcgtcgagcccgggaccgccgacgcggagccggcgaccacc
cccacggtggagcacgtgccggtcaagaagcggggctcgcgcaagcggtga
DBGET
integrated database retrieval system
