Nocardia sp. CS682: DMB37_14145
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Entry
DMB37_14145 CDS
T06040
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
noz
Nocardia sp. CS682
Pathway
noz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMB37_14145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noz03019
]
DMB37_14145
03009 Ribosome biogenesis [BR:
noz03009
]
DMB37_14145
Enzymes [BR:
noz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DMB37_14145
Messenger RNA biogenesis [BR:
noz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DMB37_14145
Ribosome biogenesis [BR:
noz03009
]
Prokaryotic type
rRNA helicases
DMB37_14145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QBS41087
UniProt:
A0A4P7H2N4
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All DBs
Position
3129525..3131315
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AA seq
596 aa
AA seq
DB search
MSTNQVDSVPGDNDRDTDGPTFADLGIDDRILAAIADVGYESPSPIQAATIPPLLSGADV
VGLAQTGTGKTAAFAIPILMGLDTSGKLPQSLVLAPTRELAIQVAEAFGRYATHIPGLNV
LPIYGGQAYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLKYLVLDEADEMLKMGF
QEDVERILKDTPSTKQVALFSATMPAAIRKISKQYLNNPVEITVKSKTSTATNITQRWVQ
VSHQRKLDALTRVLEVESFEAMIIFVRTKQATEELAEKLRARGFSAAAINGDIAQNQRER
TIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAL
LFVAPRERHLLKSIERATRHPLEEMQLPSVDDVNAQRVAKFGDDITESLTSSNLALFRRL
IEDYEREHNIPLVDIAAALAVLSRDGDNFLMQPEPPEPVRERRERPDRPRRFEGEDDRTG
FGSHSRANGTELATYRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELP
ADLSPETLEALRRTRISGVLIQLTPDQGPPGQRSFTRGPRREGGNAKRPERRKPRS
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccaatcaggtcgacagcgttcctggcgacaacgacagggacaccgacggcccg
actttcgccgatctcgggatcgatgaccgcatcctcgcggccatcgccgatgtgggctac
gagtcgccgtcgccgatccaggccgcgacgattccgccactgctcagcggcgccgatgtg
gtcggcctcgcgcagaccggcaccggcaagaccgcggcgttcgccatcccgatcctgatg
ggtctcgacacctccggcaaactcccgcagtcgctggtgctggcgccgacgcgcgagctc
gccatccaggtggccgaggcgttcggccgctacgccacgcacatccccgggctgaacgtg
ctgccgatctatggcggccaggcctacggtgtgcagctgtccggcctgcgccgcggcgcg
cacgtggtggtcggcacgccgggccgggtgatcgatcacctggagaagggcaccctcgac
ctgtcgcagctgaagtacctggtgctcgacgaggccgacgagatgctgaagatgggcttc
caggaggacgtcgagcgcatcctcaaggacacgccgtccaccaagcaggtcgcgctgttc
tcggcgaccatgcccgcggcgatccgcaagatctccaagcagtacctgaacaatccggtc
gagatcaccgtcaagtcgaagacctcgaccgccaccaacatcacccagcgctgggtgcag
gtctcgcatcagcgcaagctggacgcgctgaccagggtgctcgaggtcgagtcgttcgag
gcgatgatcatcttcgtgcgcaccaagcaggccaccgaggagctcgccgaaaaactgcgc
gccaggggcttttccgccgcggccatcaacggtgacatcgcgcagaaccagcgcgagcgc
accatcggccagctcaagtccggcgcgctggacatcctcgtcgcgaccgacgtggccgcg
cgtggtctggacgtggaccgcatctcgcacgtggtgaactacgacatcccgcacgacacc
gagtcctatgtgcaccgcatcggccgcaccggccgggccgggcgcagtggtgaggcgctg
ctgttcgtcgcgccgcgcgagcgtcacctgctcaagtcgatcgagcgggccaccaggcat
ccgctggaagagatgcagctgcccagcgtcgacgacgtcaacgcgcagcgcgtggccaag
ttcggcgacgacatcaccgagagcctgacctcgtcgaacctggcgctgttccgcaggctc
atcgaggattacgaacgcgagcacaacattccgctggtcgacatcgcggcggcgctggcc
gtgctgtcccgcgacggcgacaacttcctgatgcagcccgaaccgccggagccggtgcgc
gagcgccgcgaacgcccggatcggccgcgccggttcgagggtgaggacgatcggaccggt
ttcggttcgcacagccgggccaacggcaccgagctggccacctaccgcatctcggtcggc
aagcggcaccgcgtggtgcccggcgcgatcgtcggcgccatcgccaacgagggtggttta
cgccgcagcgacttcgggcacatcagtatccggcccgaccacagtctggtagagctgccc
gcggacctgtcccccgagacgctggaagcattgcgccgcaccaggatcagcggcgtcctc
atccagctcaccccggaccagggtccgccgggacagcgctcgttcacccgcggcccgcgc
cgcgagggcgggaacgcgaagcggccggagcggcgtaagccgcgctcctga
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