Nocardia sp. CS682: DMB37_17175
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Entry
DMB37_17175 CDS
T06040
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
noz
Nocardia sp. CS682
Pathway
noz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
noz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DMB37_17175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noz03021
]
DMB37_17175
03400 DNA repair and recombination proteins [BR:
noz03400
]
DMB37_17175
Enzymes [BR:
noz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DMB37_17175
Transcription machinery [BR:
noz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DMB37_17175
DNA repair and recombination proteins [BR:
noz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DMB37_17175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QBS41604
UniProt:
A0A4P7H4M0
LinkDB
All DBs
Position
complement(3818964..3822917)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVAVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL
YRELIDRYGEYFTGAMGAESIQKLMENFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQTNGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTRLEEGAKGEYK
AAGKDKAEFGVYSSPAEAQMAVDRGELTVRSLIKVRLTHQRPPKDIEAKLFPEGWTRGDA
WIAETTLGRVLFNELLPADYAFINEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMSDVLVPPEKTEIMERYEALADQIEKKYQRGALDHQERNNALVKIWQEA
TEEVGTALRAHYPPDNPIITIVESGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCATERGIIVHI
ADKQADGSLIRDAHVETSAYARTLASDAVDAKGNLVIAKGADLGDPAIDALLGAGITEVR
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRMEDDDRFYKITIIPDDGGEEVVYDKL
SKRQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRIMGPRQVQIHLVHEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERSEFEASNRRVVAEGNEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNITVQPTEEARAAAYAVPSYDDTYYSPDSFGQTTGAAVPLDDYGFSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccggatcggcctggccaccgcggacgacatc
cgccagtggtctttcggcgaggtgaaaaagccggagaccatcaactaccgcaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtcctacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcaccg
gtcacccacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctcgacctg
gcgccgaaggatctggaaaagatcatctacttcgccgcctacgtcatcgtcgcggtcgac
gacgagctgcgccacaacgagctcagcacgctcgaagccgagatggaggtcgagaagaag
gcggtcgccgaccagcgcgacgccgacctcgaggcccgtgcccagaagctcgaggccgat
ctggccgagctcgaagccgagggtgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgcgcccagcgtgagctggatcggctcgac
gagatctggaccaccttcaccaagctggcgcccaagcagctcatcgtcgatgaggtgctc
taccgcgagctgatcgaccgctacggcgagtacttcaccggcgccatgggtgcggagtcc
atccagaagctgatggagaacttcgacatcgacgccgaggccgagagcctgcgggagacc
atccgcagcggtaagggccagaagaagctgcgcgcgctcaagcggctcaaggtcgtcgcg
gcgttccagaccaacggcaactcgccgatgggcatggtgctcgacgccgttccggtgatt
ccgccggagctgcgcccgatggttcagctcgacggtggccggttcgccacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgcg
ctgttcgacaacggccgtcgcggccgcccggtcaccggaccgggtaaccgcccgctgaag
tcgctgagcgatctgctcaagggcaagcagggtcgtttccggcagaacctgctgggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctgaagctgcaccag
tgtggtctgcccaagctgatggcactggagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcgcccaccctgcaccgcctcggcatccaggcattcgagccgcagctcgtcgagggtaag
gcgatccagctgcacccgctcgtctgtgaagcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgcctgcctccggccggccgctcgccatgccgcgtctggac
atggtgaccggcctgtactacctgacccgcctcgaagagggcgcgaagggcgagtacaag
gccgcgggcaaggacaaggccgagttcggcgtctactcctcgcccgccgaggcacagatg
gcggtggaccgcggtgagctcaccgtgcgttcgctgatcaaggtgcgcctcacccaccag
cgcccgccgaaggacatcgaggcgaagctgttcccggagggctggacccgcggcgacgcg
tggattgccgagaccaccctcggtcgcgtgctgttcaacgagctgctcccggcggactac
gcgttcatcaacgagcagatgccgaagaagcgtcaggcgacgatcatcaacgatctggcc
gagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctgaaggacgcgggcttc
tactgggccacccgatccggcgtgacggtctccatgtccgacgtgctggtgccgccggag
aagaccgagatcatggagcgctacgaggcgcttgccgatcagatcgagaagaagtaccag
cgtggtgcgctcgatcaccaggagcgcaacaacgccctggtcaagatctggcaggaagcg
accgaagaggtcggtacggcactgcgggcgcactacccgccggacaacccgatcatcacg
atcgtcgagtcgggcgccacgggtaacttcacccagactcgtaccctcgccggtatgaag
ggtctggtgacgaacccgaagggtgagttcatcccgcgcccgatcaagtcctcgttccgt
gagggcctgaccgtgctcgagtacttcatcaacacccacggtgctcgtaagggtctggcc
gataccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcg
caggacgtgatcgtgcgcgagcacgattgcgccaccgagcgcggcatcatcgtgcacatc
gccgacaagcaggcggatggctcgctcatccgcgacgcgcacgtggagacctccgcgtac
gctcgcacgctcgcttcggacgcggtggacgccaagggcaacctcgtcatcgccaagggc
gccgacctcggcgacccggcgatcgacgcgctgctcggggcaggcatcaccgaggtccgg
gtccgctccgtgctgacctgcaccaccggtaccggtgtctgtgccacctgctacggccgc
tcgatggccaccggcaagctggtcgacatcggtgaggccgtcggcatcgtcgccgcgcag
tccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcgcg
ggcgatgacatcaccggcggtctgccccgggtgcaggagctgttcgaggcccgtgtgccg
aagggcaaggctccgatcgccgaggtcagtggccgggtccggatggaggacgacgaccgc
ttctacaagatcaccatcatccccgatgacggtggcgaagaggttgtctacgacaagctc
tcgaagcgtcagcgtctgcgtgtcttcaagcacgacgacggcaccgagcgtctgctctcc
gacggtgaccacgtcgaggtcggccagcagctgctggaaggcgcggcggatccgcacgag
gtgctgcgcatcatgggtccccgtcaggtgcagatccacctggtccacgaggtccaggag
gtctaccgctcgcagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgccag
atgctgcgtcgcgtgacgatcatcgactcgggcgccacggagttcctgcccggttcgctc
accgagcgttccgagttcgaggcctccaaccgtcgcgtcgtcgccgagggcaacgagccc
gcggcgggtcgcccggtgctgatgggtatcacgaaggcgtcgctcgcgacggattcgtgg
ctgtcggcggcgtccttccaggagaccactcgagtgctgacggacgcggccatcaactgc
cgctccgacaagctcatcggtctcaaggagaacgtgatcatcggcaagctgatcccggcc
ggtaccggtatcaaccgctaccgcaacatcacggtgcagccgaccgaagaagcccgtgcc
gccgcgtacgcggtgccgtcctacgacgacacctactacagcccggacagcttcggccaa
accaccggcgccgcagtcccgctcgacgactacggtttcagcgactaccgctaa
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integrated database retrieval system
