Nocardia sp. CS682: DMB37_29800
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Entry
DMB37_29800 CDS
T06040
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
noz
Nocardia sp. CS682
Pathway
noz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMB37_29800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noz03019
]
DMB37_29800
03009 Ribosome biogenesis [BR:
noz03009
]
DMB37_29800
Enzymes [BR:
noz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DMB37_29800
Messenger RNA biogenesis [BR:
noz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DMB37_29800
Ribosome biogenesis [BR:
noz03009
]
Prokaryotic type
rRNA processing factors
DMB37_29800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Cas3_HD
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QBS43674
UniProt:
A0A4P7H9V4
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All DBs
Position
6607186..6610254
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AA seq
1022 aa
AA seq
DB search
MPERIRVHALAKLLGVTSKRILAKLTELGSDARSAQSNVDRAIAESVRDALGPPDGDAPA
AQAAETPVVQQAETPVAQQPETAAERPAETPEEPAPSRGHGGLVFSAPEPLIGHSGSENP
NEVAHQPSVQLFTHPVREEPHVAAPVVFESAAVVQAPLFLPPDAAAAEQTRRKRRTERDV
RREEPVVEPQPEEEPEAVEDDQESADQSDADGQPRRRRRGRRGRGRGRGEQHSDADDEND
SDDTEDEQSGDATADTTDSTDSAEDNTDSDDDENEPEGASRRRRRRRRRKVAGEPAEAEA
VATEDDPPNTVVHEREPRNKSRSRATTVDEVQGITGSTRLEAKRQRRRDGREAGRRRPPI
LTESEFLARREAVDRVMVVREKAFPDHPTATQVAVLEDNILVEHFVTSTGSASMVGNVYL
GKVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGKERKIEQALKPGELVLVQVSK
DPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEILRDIVPNDAGVII
RTASEGVAEDELARDVERLQATWRTIEKAAEGKNDGQPKTLYEEPDLLVKVIRDLFNEDF
SKLVIEGDRAWSTVEKYIGTVAPEMLARVSRHDNNNVDVFEAYRIDEQLAKALDRKVWLP
SGGTLVIDRTEAMTVVDVNTGKFTGSGGSNLEETVTRNNLEAAEEIVRQMRLRDIGGMIV
VDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTC
EHCHGRGILVHAYPVEPSSGDDGAARGTRETGSRRRRGRDKSAAPAAPVAASNGTAPVES
EEDIAVKRAHPVALAMAAHHGDEDESEVTGNQSDVTEDESAEIEPLETEVVTEAAVAVPA
DDVDAEPAEVVEVVETVTEIVPVAETPVAETPAESAAPAAEDRAVTNGAPAPGARTGRRR
RVARSAAAPAADSSGAVFVLPTADQAPAPAVDFTASAPVEVPQRRPRRRAVGRPAGPPPA
ES
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
ttgccggagcgaatccgagttcacgcactcgccaagctgctgggggtaacgagtaagcgc
atcctggccaagctcaccgagttggggtccgacgcgcgcagcgcgcaatcgaatgtcgac
cgggcgattgcggaatccgtccgcgacgcgctcggcccgccggacggtgacgccccggcg
gcgcaggcggccgagactccggttgtccagcaggccgagactccggtcgcgcagcagccc
gagaccgcggccgagcgaccggccgagactccggaagagcctgcgcccagccggggccat
ggcggactggtcttttccgcacccgaaccgctgatcggccactccgggtcggagaacccg
aacgaggtcgcgcaccagccgtcggtgcagctgttcacccaccccgtccgggaagagccg
cacgtcgcggcgccggtggtcttcgagtccgccgccgtcgtgcaggcaccgctgttcctg
ccgccggatgccgcggccgccgagcagacccgccgtaagcgccgcaccgagcgcgatgtc
cgccgcgaagagccggtggtcgagccgcagcccgaggaagagcccgaggcggtcgaggac
gaccaggaatcggccgaccagagcgatgctgacggtcagccgcgccgcaggcgccggggc
cgtcgtggccgtggccgcggtcgtggggagcagcacagcgacgccgacgacgagaacgac
tcggacgacaccgaggacgagcagagtggcgacgccaccgccgacaccacggactcgacc
gactccgccgaggacaacaccgactccgacgacgacgagaacgagccggagggcgcgagc
cgtcgccgccgtcgtcgccgccgtcgcaaggtggcgggcgagcccgccgaggccgaggcc
gtcgccaccgaggacgacccgccgaacaccgtcgtgcacgagcgcgagccgcggaacaag
agccgcagccgcgccaccacggtcgacgaggtgcagggcatcaccggttccacccggctc
gaggccaagcggcagcgcaggcgcgacggccgcgaggcaggccggcgtcgcccgccgatc
ctgaccgagtcggagttcctggcccgtcgcgaagcggtggaccgggtgatggtggtgcgc
gagaaggcgttcccggatcacccgaccgccacccaggtcgccgtgctcgaggacaacatc
ctggtcgagcacttcgtcaccagcaccggttccgcgtcgatggtcggcaatgtctacctc
ggcaaggtgcagaacgtgctgcccagcatggaggcggcgttcgtcgacatcggccgcggc
cgcaacggcgtgctctacgcgggcgaggtgaactgggaggccgccggtctcggcggtaaa
gagcgcaagatcgaacaggcgctcaagccaggcgaactggtgctggtccaggtctccaag
gacccggtcgggcacaagggcgcccggctcaccacccagatcagcttggccggacgcttc
ctggtgtatgtgccgggcggcacgtccaccggcatcagccgcaagctgcccgacaccgaa
cgcaagcggctcaaggagatcctgcgcgacatcgtccccaacgacgccggtgtgatcatc
cgcaccgcgtccgagggtgtcgccgaggacgagctggcccgcgacgtggaacgcctgcag
gccacctggcgcaccatcgagaaggccgccgagggcaagaacgacggtcagcccaagacg
ctgtacgaagagcccgacctgctggtcaaggtgatccgcgacctgttcaacgaggacttc
tccaagctcgtcatcgagggtgaccgggcctggagcacggtcgagaagtacatcggcacc
gtcgcaccggagatgctcgcccgggtctcccggcacgacaacaacaacgtcgatgtgttc
gaggcctaccggatcgacgaacagctggccaaggcgctcgatcgcaaggtgtggctgccc
tcgggcggcaccctggtgatcgaccgcaccgaggcgatgacggtggtcgacgtgaacacc
ggcaagttcaccggttccggcggcagcaacctggaagagacggtcactcgcaacaacctg
gaggcggccgaggagatcgtgcgccagatgcggttgcgcgatatcggcggcatgatcgtg
gtcgacttcatcgacatggtgctcgagtcgaaccgtgacctggtgctgcgcaggctgacc
gaggcgctcggccgcgaccgcacccgccatcaggtgtccgaggtgacctcgctcggcctg
gtgcagatgacccgtaagaagctgggcaccggtctggtcgaggccttctcgaccacctgt
gagcactgccatgggcgcggcatcctcgtgcacgcttacccggtggagccgtcctccggc
gacgacggtgccgcacgcgggacccgggagaccggatcgcgtcggcgccgtggtcgcgac
aagagtgcggcccccgccgcgcctgtcgccgcgagcaacggcaccgcgccggtcgagtcc
gaggaggacatcgccgtcaagcgggcgcacccggtcgccttggcgatggccgcgcaccac
ggtgacgaggacgagtcggaggtgaccggcaaccagtcggacgtcaccgaggacgagtcg
gccgagatcgagccgctcgagaccgaggtcgtcaccgaagccgcggtggccgtgcccgcc
gatgacgtggacgccgaaccggccgaggtggtcgaggtcgtggaaaccgtcacggagatc
gtgccggtcgccgagacgccggtcgccgaaacacctgcggaatcggcggcacccgctgcc
gaggatcgcgcggtaaccaacggtgcgccggccccgggcgcccgcaccggacgacggcgc
agagtcgcccgttcggccgccgcgcccgccgcggacagcagcggtgcggtgttcgtgctg
ccgaccgcggaccaggctccggcccccgctgtcgacttcaccgcgtcggctccggtcgag
gtgccgcagcgacggccgcggcgccgtgctgtgggccgtccggcgggcccgccgcctgcg
gagtcgtag
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