Nocardia sp. CS682: DMB37_35670
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Entry
DMB37_35670 CDS
T06040
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
noz
Nocardia sp. CS682
Brite
KEGG Orthology (KO) [BR:
noz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noz03019
]
DMB37_35670 (hrpB)
Enzymes [BR:
noz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DMB37_35670 (hrpB)
Messenger RNA biogenesis [BR:
noz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DMB37_35670 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_19
CON_HrpB
AAA_30
ResIII
AAA_25
RoxA-like_Cyt-c
AAA_22
nSTAND3
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QBS46470
UniProt:
A0A4V1BHK9
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All DBs
Position
7838471..7840906
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AA seq
811 aa
AA seq
DB search
MPELPDLPVRGALDHIVETLAERETAVLVAPPGTGKTTLVPLALAAGTSGRVLVAEPRRL
AARAAAGRMAALLGEAVGETVGYSVRGDRRVGKQTRIEVVTSGLLVRRLQGDPELAGVDV
VVLDECHERHLDADLLLALLLDARAGLRPDLRVLATSATVAAERLSVLLGGAPVLHVQGR
AYPVDLTYVPPLPRERVEAQVARATRAALTATEGDVLVFLPGAAEIRRTTALLGGVDGVD
VVPLHGRLSAAGQDTALRPGSRRRVVLSTAVAESSLTVPGVRAVVDSGLARVPRIDRGRG
LSGLATVRVSAAVAEQRAGRAGREAPGQVWRCWPEHEHSTLPAYPEPEIRTADLTRLALE
LACWGTADGHGLAWWDAPPPGGLAAGGEVLHALGAVDDDGAVTDRGRRIARIGLHPRLAR
ALLDGAPVVGARAAAEVITVLDDDTLIEGVDLAAGLRVLRRERPARWRREVERLARLVDP
SDGADDPAFVVALAHPERLARRRSAGSASYLMVGGTAVTLPPGSGLGDAEWLAVGVATRD
PGRSDGWIRLAAVADEQLARRAASNLLTTAEEVDWIDGEVVARRIERLGAIVLSEKRIHN
PDRQLLSAAVHRGLSSTGLALLRWDADAIALRQRLEFLHRTLGTPWPAVDDESLLTAADT
WLGPELATARSRADLARIDAGQALRRLLPWPDATRMDELAPERLAVPSGSRPRLDYSTDP
PVLAVKVQEVFGWTEAPRLADGRVPIVLHLLSPAQRPVAVTADLASFWRTGWPQVRADLR
GRYPKHAWPEDPTTVPAHRGTARNATGRPRG
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
ctgcctgagcttcccgatctgccggtccgcggcgcgctcgaccacatcgtcgagacgttg
gccgaacgcgagaccgcggtgctggttgcgccgccagggacggggaagacgaccttggtg
ccgttggcgttggcggcggggacgagtgggcgggtgctggtcgcggagccgcgacggttg
gcggcacgggccgcggcgggccggatggccgcgttgctgggggaggcggtcggcgagacc
gtcggttactcggtccgcggggatcggcgggtagggaaacagactcggatcgaggtcgtc
acctcgggattgctggtgcgacggttgcagggcgatcccgagttggcgggcgtggacgtt
gttgtcctcgacgagtgtcatgagcggcatctcgacgcggacctgctgctggcgttgctg
ctcgacgcgcgggccgggttgcgcccggatctgcgggtgctggcaacctcggcgaccgtt
gcggcggaacgtctttcagtgctgctgggcggagcaccggtgctgcacgttcagggccgg
gcctatccggtcgacctgacgtatgttccgccgctaccccgggaacgggtcgaagcgcag
gtcgcccgcgccaccagggcggcactcaccgctaccgagggtgacgtgctcgtcttcctg
cccggtgccgccgaaatccgccggacgacagcacttctcggcggcgtggacggggtggac
gtggttccgttgcacggcaggctgtccgccgccgggcaggatacggcgttgcggcccggg
tcgcggcggcgcgtggtgttgtccacggcggtagcggagtccagtttgacggtccccggt
gtgcgcgcggtggtggattcggggctggcacgggtgccgcgaatcgatcggggacgcggg
ctgtccggccttgcgacagtaagggtttcggcggcggtggccgagcagcgggccggtcgg
gccgggcgtgaggcaccggggcaggtgtggcgatgctggccggaacacgagcacagcacg
ctgcccgcttatcccgagccggagattcggacggcggacctgacgcggctggctttggag
ctggcctgctggggcacggccgacggccacggcctcgcctggtgggacgccccgccgccc
ggcgggttggcggcaggcggagaggtgttgcacgcgttgggagccgtcgatgacgacggt
gcggtgaccgaccgtgggcggcgcatcgccaggatcgggttgcatcctcggttggcgcgg
gcgctgctcgacggagcgcccgtggtcggtgcgcgggcggctgcggaagtgatcaccgta
ctcgacgacgacacgctcatcgagggagtcgatctggccgccggcctgcgtgtgctgcga
cgcgagcgtccggcgcgctggcggcgtgaggtcgagcggctggcccgcttggtcgacccg
tcggacggcgctgatgacccggctttcgttgtcgcactggctcatccggagcgcctggcg
cgccgccgcagtgctggatcagcgagctatctcatggtcggcgggaccgcagtgacgcta
ccgcccggttcgggattgggtgatgcggagtggctggcggtcggtgtcgcaacgcgcgat
ccgggccgttccgacggctggatccggctggccgccgtcgccgatgaacaactggcccgc
cgtgccgcgtcgaacctgctgaccaccgccgaggaggtcgattggatcgacggcgaggtg
gtcgcccggcggatcgagcgtctcggtgcgatcgtgttgtccgagaagcggatccataat
cccgatcgccaattgctcagcgctgcggtgcatcgcggactgagctcgaccggcctggcc
ctgctgcgctgggatgccgacgccatcgccctacgacagcgcctcgaattcctgcaccgc
accctcggcaccccgtggcccgcggtcgacgacgagtcgctgctcaccgccgcggacacc
tggctcggccccgagctcgccaccgcccgcagccgcgccgacctcgcccgcatcgacgca
ggccaagccctgcgccgcctactaccctggccggacgccacccgcatggacgaactggca
cccgaacgcctcgccgtcccctccggcagccgcccgcgcctcgactactccaccgacccg
ccggtcctcgcggtcaaggtgcaggaggtcttcggctggaccgaagcaccccgcctggcc
gacggccgcgtcccgatcgtgctgcacctgctctcacccgcccaacgcccggtcgcggtc
accgccgacctggcctcgttctggcgcaccggctggccccaagtccgcgccgacctgcgc
ggccgctaccccaaacacgcctggcccgaagaccccaccacggtccccgcccaccgcggc
accgctcgcaacgcgaccggccgaccacggggttga
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