Neofusicoccum parvum: UCRNP2_10033
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Entry
UCRNP2_10033 CDS
T03126
Name
(GenBank) putative pre-mrna-splicing factor syf1 protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
npa
Neofusicoccum parvum
Pathway
npa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
UCRNP2_10033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_10033
03041 Spliceosome [BR:
npa03041
]
UCRNP2_10033
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
UCRNP2_10033
Spliceosome [BR:
npa03041
]
Complex B
Other components
Prp19-related factors
UCRNP2_10033
Complex C
UCRNP2_10033
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_8
Mad3_BUB1_I
TPR_2
RPN7
Motif
Other DBs
NCBI-ProteinID:
EOD43259
UniProt:
R1GBL5
LinkDB
All DBs
Position
Unknown
AA seq
842 aa
AA seq
DB search
MPGAIHPAAAADAPQPAQVPRAKRTTPTKSSDLYLIGDSDAIYEQELIRNPGSIKPWLDY
AAFKRQNGSLLEQAFVLERACTTLPRSYKLWKMYLSLRTQHLQGKNPAKYQAHYVKVNAL
FERALVLLNKMPRIWEMYLEFLMQQPLVTTTRRTFDRALRALPLTQHNRIWALYRPFANS
ASGETAVKIWRRYIQIHPEHAEDFIALLIDMRQYTEAVKKYMDILNNPRFKSREAKGPFQ
FWTEMVELMIDHAKEIETGDDVGIDVEKIIRSGIAKFSDQRGILWVGLARYWINKGDYER
ARDIFEEGITTVMTVRDFSIVFDTYAEAEEALIGIKMEEAGKRQEKGIDDEGLDLDLDIR
MARFEQLMDRRPFLVNDVLLRQNPNNVNEWEKRVGLWGDNKAEVVKTYTDAIATIHPKKA
VGKFHELWTNYAKFYENGGDLQNARIIMEKAVKVPFKSVNELAEMWCEWAEMELRNENFD
RAVDIMAKATQAPKRSTIDYFDESLSPQQRVHKSWKLWSFYVDLVESVSTLEETKKVYER
IFELKIATPQTVVNYANLLEENKYFEDSFKVYERGLDLFSYPVAFELWNLYLTKAVDRKV
GMERLRDLFEQALEECPSKFAKVLYLMYGALEEERGLARHAMRIYERATRAVADEDRLEM
FEFYITKSASNFGLTSTRSIYERAIAALPDKEAKEMCLKFAEMERRLGEIDRARAIYGHA
SQFCDPRTEPAFWQKWESFEVQHGNEDTFKEMLRIKRSVQAQFNTDVNFIASQALARAQQ
PNGTDGDEQEKVDAMAALERQARAPEGFVAASSGPEGGNKPTAQAEAPVAANPDALDIDD
DL
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgcctggagccatccaccccgccgctgccgccgacgcgccgcagcccgcacaggttcca
cgggcgaagcgcaccacgccgaccaagtcctccgacctgtacctgatcggagacagcgac
gccatctacgagcaggagctcatccgcaatccgggcagcatcaagccgtggctcgactac
gccgccttcaagcgccagaatggctccctgctcgagcaggcctttgtgctggagcgcgcc
tgcaccactctgccgcgctcctacaagctgtggaagatgtacctgagcctgcgcacccag
catctgcagggcaagaacccggccaagtaccaggcccactacgtcaaggtcaatgctctc
ttcgagcgcgccctggtgctgcttaacaaaatgccgcgcatctgggagatgtacctcgaa
tttttgatgcagcagcccctcgttaccaccacccgccgcaccttcgaccgcgccctccgc
gcccttccgctcactcagcacaaccgcatatgggccctctaccgtcccttcgccaactcc
gcctcgggcgagaccgcggtcaagatctggcgccggtacatccaaatccacccggaacac
gcggaagactttatcgctctcttgatcgacatgcgccagtacaccgaggctgtcaagaag
tacatggacatcctgaacaaccccagattcaagagcagagaggcaaaggggcccttccag
ttctggacggagatggtcgagttgatgatagaccacgcgaaggagattgagacgggggac
gatgttgggatcgacgtcgagaagatcattcggagcggaatcgccaagttctccgaccaa
aggggtatcttgtgggttggcctggcaagatactggatcaacaagggcgactacgaacgc
gcacgcgatattttcgaggagggcatcaccaccgtcatgaccgtccgcgacttctccatt
gtcttcgacacgtacgcggaagccgaggaggccttgattggtatcaagatggaggaggca
ggcaagcgccaggagaaggggatcgatgatgagggtcttgacctggacctcgacattcgg
atggcccgtttcgagcaacttatggatcgccgacccttcctcgtgaacgacgtgcttctc
cgacagaaccccaacaatgtcaacgagtgggagaagcgtgtcggtctctggggtgacaac
aaggccgaggttgtcaaaacctatactgacgccattgccacgatccacccgaagaaggct
gttggtaaattccacgagctttggacaaactacgcgaagttctacgagaatggtggggat
ctgcagaacgcccgtatcatcatggagaaggcggtcaaggtgccattcaaatcggtcaat
gagcttgccgagatgtggtgcgaatgggcagagatggagctcagaaacgagaacttcgac
cgtgcggtggatatcatggccaaagcgacccaggcgccgaagagatcgacgatcgactat
tttgacgagtccctctcgcctcagcagagagttcacaagagttggaagctgtggagtttc
tacgtcgatttggtggagagcgtcagcactctcgaagagacgaagaaggtctacgaacgc
attttcgagctgaagattgccacgcctcagactgttgttaactacgccaacctgctcgag
gaaaacaaatacttcgaggattcgttcaaggtttacgagcgcggacttgacctgttcagc
tacccggtcgcttttgaactatggaacctgtacctcaccaaggctgtggaccgcaaggtt
ggcatggaaagattacgcgacctattcgagcaagcgctcgaagaatgtccgtcaaagttt
gcgaaggtgttgtatttgatgtacggcgcattggaggaggaacgagggctggctcgtcat
gccatgcgcatttatgagcgtgctacccgcgccgtcgccgacgaggacaggttggaaatg
ttcgagttctacatcaccaagtcggcgtccaacttcgggcttacttcgactcgctccatc
tacgagcgcgccattgctgcgctgccggacaaggaagcgaaagagatgtgtctcaaattc
gcggagatggaaagacggctcggcgaaatcgaccgtgccagagcgatctacggccatgcc
agtcaattctgcgacccgaggaccgaacctgcattctggcagaaatgggagagcttcgaa
gtgcagcacggaaacgaagacacgttcaaggagatgctccgcatcaaaaggagtgtgcaa
gcacagttcaatacggacgtcaacttcatcgcctcccaggcacttgcacgcgctcagcaa
cccaacggcaccgacggcgacgagcaggagaaggtggatgctatggctgcactcgagcgc
caagccagggctcccgagggcttcgttgcagccagcagcggccccgagggaggcaacaaa
ccgacggcacaggctgaagcacctgttgcagcgaatcccgacgcacttgacattgacgac
gacctatag
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