Neofusicoccum parvum: UCRNP2_10116
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Entry
UCRNP2_10116 CDS
T03126
Name
(GenBank) putative atp-dependent rna helicase sub2 protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
npa
Neofusicoccum parvum
Pathway
npa03013
Nucleocytoplasmic transport
npa03015
mRNA surveillance pathway
npa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
UCRNP2_10116
09122 Translation
03013 Nucleocytoplasmic transport
UCRNP2_10116
03015 mRNA surveillance pathway
UCRNP2_10116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_10116
03041 Spliceosome [BR:
npa03041
]
UCRNP2_10116
Enzymes [BR:
npa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UCRNP2_10116
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
UCRNP2_10116
Spliceosome [BR:
npa03041
]
Complex C
Other components
EJC/TREX
UCRNP2_10116
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
UCRNP2_10116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
EOD43189
UniProt:
R1GBE3
LinkDB
All DBs
Position
Unknown
AA seq
439 aa
AA seq
DB search
MSHEEDLIDYSDEELNQTDAVATGATGAAANGEQKKGDLTVTGEKKGSYVGIHSTGFRDF
LLKQELLRAITDCGFEHPSEVQQICIPQAIIGSDILCQAKSGLGKTAVFVLATLQQLEPI
AGETAVLVLCHTRELAYQIKNEYARFSKYLPDVKTSVFYGGTPMQKDIEILSNKDTHPHI
IVGTPGRLNALVREKKLRLGGIKMFVLDECDKMLDQIDMRRDVQEIFRATPTTKQVMMFS
ATLAKDTRPICKKFMRNPLEIYVDDESKLTLHGLQQYYIKLSEAEKNRKLNDLLDNLEFN
QVIIFVKSTLRATELDRLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFG
RGIDIERINLAINYDLPGDADSYLHRVGRAGRFGTKGLSISFVSSEQDEQVLKEVEKRFE
VPLPEFPEGGIDASTYMAN
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacgaggaggacctgatcgactactccgacgaggagctcaaccagaccgatgcc
gtcgccaccggtgcgactggcgcggccgccaacggtgaacagaagaagggcgacctgacc
gtgaccggcgagaagaagggcagctacgtcggcatccactccaccggtttccgggacttc
ctcctcaagcaggagcttctgcgtgccatcaccgactgcggtttcgaacatccttcggag
gtccagcaaatttgcattccccaagctatcatcggttccgacatcctctgccaggcgaag
tctggtcttggtaagacggctgtgttcgtccttgccactctgcagcagcttgagcccatc
gccggcgagactgccgtgctggttctttgccacactcgtgagctggcctaccagatcaag
aacgagtacgcccgcttcagcaagtacttgcccgatgtgaagacctccgtcttctacggt
ggtacgcccatgcagaaggacattgagatcctctcgaacaaggacacccacccgcacatc
attgtcggtacccccggtcgtctcaacgcccttgtgcgtgagaagaagctccgtctcggt
ggcatcaagatgttcgttctcgacgagtgcgacaagatgctcgaccagattgacatgcgc
cgtgacgtgcaggagatcttccgtgctacccctaccaccaagcaggtcatgatgttcagc
gccacccttgcaaaggacacccgtccgatctgcaagaagttcatgcgcaacccgctcgag
atctacgtcgatgacgagtcgaagctcaccctgcacggtctgcagcagtactacatcaag
ctgagcgaggccgagaagaaccgcaagttgaacgacctgcttgacaacctcgagttcaac
caggtcatcatcttcgtcaagagcactcttcgtgcgactgaacttgataggctcctgcgc
gagtgcaacttcccttccatcgcggtccactctggcgtctcccaggaggagcgtatcaag
cgctacaaggagttcaaggagttcaacaagcgcatctgcgtggccaccgatgtctttggc
cgtggtatcgatatcgagcgcatcaacttggccatcaactacgatcttcccggcgatgcc
gattcctaccttcaccgtgtcggtcgtgcgggccgtttcggaaccaagggtctcagcatc
tcgttcgtcagcagcgagcaagatgagcaggtcctgaaggaggtcgagaagagatttgaa
gtgcctcttcccgagttcccggagggcggtattgatgccagcacctacatggccaactaa
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