Neofusicoccum parvum: UCRNP2_3077
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Entry
UCRNP2_3077 CDS
T03126
Name
(GenBank) putative rna interference and gene silencing protein
KO
K11593
eukaryotic translation initiation factor 2C
Organism
npa
Neofusicoccum parvum
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_3077
03036 Chromosome and associated proteins [BR:
npa03036
]
UCRNP2_3077
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
UCRNP2_3077
Chromosome and associated proteins [BR:
npa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
UCRNP2_3077
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
UCRNP2_3077
microRNA pathway
RISC loading complex
UCRNP2_3077
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Piwi
ArgoN
ArgoL2
ArgoL1
PAZ
ArgoMid
Motif
Other DBs
NCBI-ProteinID:
EOD50167
UniProt:
R1ERF8
LinkDB
All DBs
Position
Unknown
AA seq
924 aa
AA seq
DB search
MLTDSRSNPQRIPEPDPNVTKTENTVVKDLSTAFARISTEDKLARRPDYGTCGRETLVYT
NYFPLHVATQCPEIYRYAVSFQPEEQAKRKKRRYIEILLQDPVFSGVMVATDYSQVIITN
KKVPLSEGSHNRRAIDVQWYPPDGEPIAETEESEKAQAARKKSTKTLLVEELGTVSLLEL
LRSLTSTGAGAYYPPKDEAIQALNVILARGPHVAPNMVAVGQNKFYPVGQHALTEAWNLS
EGLQALRGYFSSARTSVNRILVNINVSTSAFYKPGNLLELMQDYLGPTNRSPSHLLKLEA
FLRLLRVETHYMLARDGSKKRVRKVKTIYGLARSNNDTKGTWPHAANAQQVKFSYTDPDG
NVSLISVEEYYARVHQITLKVPTSPVVNVGNRENPTYIPPELCEVLPGQVAGRMLSANQT
RMMIEFAARPPNHNATSITQQGLEVMQVRQNEALSAFGINIGGNLLTVQARILPVPKLQY
AGKEQQPENGKWNLARVKYTKPATINSWGCLVIEERGRPTFQSQEQALELVTTFKAALQS
YGLRMGDPQPPAKIAISWPYNASEITEVVSAKFAQMVKMRIGMLLVLLPSDNTVLYDTIK
YQGDVRFGVATVCTIAKKILNQRGQAQYMANVGLKFNLKCGGVNHDMRIQQLAPLDNKTI
LIGIDVSHPVPGSSDSAPSITGVVGSVDAQFNNYPASVRTQTGRQEMVDSDDLTEMIVER
FELWQKRNGGALPNKVIIYRDGVSEGQFPVVIRDEWPSFAAAYQRLYGAEKNFPKSSLVI
CTKRGHTRFYPTKPEDSEGRNMNVKPGTVVDRGITGERLFDFFLVAHAGLQGTSKPAHYI
CLRDENKLGADQLQRITHNLCYVYGRATRAVSVCPPAYYADLVCERGRSYLHSFLKENTN
VTYDRSRHWVRGVHDRLKDTMFYL
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgctaacagactctcgtagcaacccgcagaggattcccgagccagatcccaacgtcacg
aaaaccgagaacaccgtggtgaaagacctctcgaccgctttcgcacgaatctccaccgaa
gacaagcttgcaagacgtccggattacggcacttgtggccgtgagacgctagtctacacg
aactacttccctcttcatgttgcgacccagtgtcccgagatctatcgatatgctgtgtct
ttccaaccagaagagcaggcgaagcggaagaagaggagatacatcgaaatattgctccaa
gatccggtgttcagtggggtcatggtcgctaccgactactcgcaggtcatcattaccaac
aagaaggtgccgctaagcgagggatctcacaatcgaagggccatcgacgttcagtggtat
cctccggatggagagccgattgcagaaactgaggaatcggagaaagcccaagcagcgcgc
aagaagagcacgaagaccttgctggttgaagaacttggcactgtctccctgcttgagctc
ctcaggtctttaacctccaccggtgcgggcgcgtactatcccccgaaggacgaagccatc
caagccctcaacgtcatcctggcccgcggacctcacgtcgctccgaacatggtcgctgtg
gggcagaacaagttctatcccgttggccaacatgctctgacggaagcgtggaacttgtcg
gaaggtctgcaagccctgcgtggatacttctccagcgctcgtacaagtgtgaaccgcatc
ttggtcaacatcaacgtgtccacttctgccttctacaagcctggcaacttgctcgagctc
atgcaggattaccttggtcccacgaatagaagcccaagccatcttctgaagctcgaggct
ttcctcagactccttcgcgtggaaactcactatatgctggcaagggacggcagcaaaaag
cgcgtccgcaaggtcaagactatctacgggctggctaggtccaacaacgacaccaagggt
acttggcctcatgcggccaatgcgcagcaggtcaaattcagttacacggatcctgacggc
aatgtgtccctgatctcggtggaagagtattacgctcgggtccaccaaatcacgctcaag
gttccgacgtctccggttgtcaatgttggcaaccgtgagaacccaacctacatccccccg
gagttgtgcgaggtgcttccgggtcaggttgcagggcgcatgctcagtgccaatcagact
cgcatgatgattgaatttgccgccaggcctcctaaccacaatgctacttccatcacccaa
cagggcttggaggtgatgcaagttcgccagaacgaagctctgtcggcgtttggcattaat
atcggcggaaacctgctcaccgtacaggcgcgcattctgccagtcccgaaactgcagtac
gccggcaaggagcagcagccggagaacggcaagtggaatttggctcgcgtcaagtatacc
aagccggcaaccatcaattcttggggatgcttggtgatcgaggagcggggtcggcccact
ttccagagccaggagcaggctctggaactggtcaccaccttcaaggctgcgctccaatca
tacggcttgcgtatgggcgacccgcagcctcctgccaagattgcgatctcctggccctac
aacgccagcgaaatcaccgaggtcgtctccgccaagttcgcccagatggtcaagatgcgc
atcggcatgttgcttgtcctactaccttcggacaacactgtgctatacgacacaatcaag
taccaaggagacgttcgctttggtgtcgccactgtctgcaccattgcaaagaagatactc
aatcagcgcggacaagcgcaatacatggctaacgtcggcctcaagtttaacttgaagtgt
ggtggtgtcaatcatgatatgagaattcagcaactggccccgctcgacaacaaaacaatc
ctcatcggcatcgatgtctcgcacccggttcccggcagctctgatagcgcgcctagtatc
acgggtgttgtcgggtcagtcgacgctcaattcaacaactacccggcatcggtccgtacg
cagaccggccgccaggagatggttgattcggatgacctcacagagatgattgttgagcgt
tttgagctctggcagaagcgcaacggcggtgctttgcccaacaaggtcatcatctaccgt
gacggtgtctctgaagggcagttcccggttgtcattcgcgacgagtggcccagcttcgcc
gcagcttaccagaggctatatggcgcggagaagaactttccaaagtcgtcactggtaatc
tgcaccaagcgtggccacacgcgcttctaccccacgaagcccgaggactcggagggtagg
aacatgaatgtgaagcctggcaccgtcgtcgaccgcggcatcactggcgagcggcttttc
gactttttcctggttgcacacgccggtcttcaaggaacttcgaagcctgctcattacatt
tgcttgagggatgagaacaagcttggtgcagatcagctgcagagaatcacccacaacctg
tgctatgtttacggccgcgccactcgcgccgtctcggtctgcccaccggcgtactacgct
gatttggtatgcgagcgtgggcgctcgtacctccactccttcctcaaggagaacacaaac
gtcacctacgacaggtcgcgccactgggtgcgcggcgtgcacgaccgtctcaaggacacc
atgttctacttgtag
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