Neofusicoccum parvum: UCRNP2_3178
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Entry
UCRNP2_3178 CDS
T03126
Name
(GenBank) putative mrna cleavage and polyadenylation specificity factor complex subunit protein
KO
K06100
symplekin
Organism
npa
Neofusicoccum parvum
Pathway
npa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
UCRNP2_3178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npa03021
]
UCRNP2_3178
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_3178
Transcription machinery [BR:
npa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
UCRNP2_3178
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
UCRNP2_3178
U7-dependent histone pre-mRNA processing factors
UCRNP2_3178
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
DUF7104
DUF445
Motif
Other DBs
NCBI-ProteinID:
EOD50032
UniProt:
R1ER59
LinkDB
All DBs
Position
Unknown
AA seq
526 aa
AA seq
DB search
MEATANNLTAQLQQARDVVLNNPANYPVILPSILPIIGHNTDVAVRRWGAEFLAETFASP
LLPDDQKQQLSLLVLDKLREFLDQPQEDVAVTKAVVQAAASIYPLVFRYIIGNHNDGSTW
QKMAQIKSNILRRMDSAPPGVRICCIKFVQRVVQTQTPGLIADPRRHEHNEISLALVPRD
HPLIPPPNLEAEASGLLDRLLSILQEEIIDALLVTATLNSLGSLIRTRASIANKIVSTVL
NFNPLKLANSPMTSKIKVMVKSMERTVRALLLNVVKKLSDPVPDEDDDYEPVFQPTEDTE
QILNKMDSSPSDANALDRAPDMALGTFNLAPPPALTEHETIEYSKGTINRVFGIMTALDD
PNRGKAQKHGFNRLAASSYDRDAWVTVITRLATRASAGLDGGPVKSEDGEVAGKGAFSIS
NAIRDSLYIYVLEDFRRRIDVAISWLSEEWYNDRLQSEASEVEPTLHYEKWALKVLDGIL
PYLDAKDKVLIRFLSEVPELVSGMLDRVKGLARDPERIILAVNAIQ
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggaggccaccgcgaacaacctgacggcgcagctgcagcaggcgcgcgacgtggtgctc
aacaatcccgccaactaccccgtcattttacccagcatcctgcccataatcggccacaac
accgacgtcgctgtgcgcagatggggtgccgagttccttgctgagacgttcgcctcgccg
ctgctgcccgacgatcagaagcagcagctgagtctgctcgtgctcgacaagctgcgcgag
ttcctggaccagccgcaagaggatgttgccgtcacaaaggccgtcgtgcaagccgccgcg
agcatctacccgctggtcttccgctacatcatcggcaatcacaacgatggttcaacctgg
cagaagatggcccaaatcaagtccaacatcctacgccgcatggactcggctccgcccggt
gtgcgcatatgctgcatcaagttcgtccagcgcgtcgtccaaacccaaacccccggcctc
atcgcagacccacgccgtcacgagcacaacgagatctccctcgcccttgtcccccgggac
caccctctgataccgccccccaatctggaggccgaggcttcgggtttgctggacaggctg
ctgagcatcctgcaggaggagataatcgacgcccttctcgttaccgctacgctgaacagt
ttggggagtctcatccgcacccgcgcctccatcgccaacaagattgtgtctactgttctc
aacttcaaccctcttaaactcgccaattcacccatgacttccaaaatcaaggtcatggtc
aagtccatggagcgcaccgtgcgcgcccttttgctgaatgttgtgaagaagctgtcagat
cccgttcccgatgaagacgacgattatgagccggtcttccagcctaccgaggataccgaa
cagatcctaaataagatggatagctcgccttcagatgccaatgctttggatcgagccccc
gacatggcattaggaacattcaatttagctccaccaccggcgttgactgaacatgagacc
atcgagtacagcaagggcactatcaaccgtgtattcggcatcatgactgccttggatgac
cctaaccgtggaaaggcacagaaacacggcttcaaccgcctagccgcaagcagttatgat
cgcgatgcatgggtcacggtaatcacgcggttagcaacacgtgcctcggccggtttggac
ggaggtccggtcaagtcggaggacggagaagttgccgggaaaggcgccttctccatcagc
aacgctatccgtgattcgctctacatttacgttctcgaggactttaggcgccgcatcgac
gtcgctatttcttggctcagtgaggagtggtacaacgaccgtctgcagtcagaggcctcg
gaggttgaaccgacgttgcattacgaaaagtgggcactgaaggtgcttgatggaatcctg
ccatatcttgacgcaaaggacaaggtcctgattcgttttctgtccgaagttccggaactg
gtttccgggatgctcgaccgcgtgaagggtcttgccagggatcctgagagaatcattcta
gcagtgaacgcaatacaatga
DBGET
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