Neofusicoccum parvum: UCRNP2_3583
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Entry
UCRNP2_3583 CDS
T03126
Name
(GenBank) putative exosome complex exonuclease rrp4 protein
KO
K03679
exosome complex component RRP4
Organism
npa
Neofusicoccum parvum
Pathway
npa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCRNP2_3583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_3583
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
UCRNP2_3583
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
UCRNP2_3583
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
ECR1_N_2
EXOSC1
Chitin_synth_2
Motif
Other DBs
NCBI-ProteinID:
EOD49651
UniProt:
R1GMV3
LinkDB
All DBs
Position
Unknown
AA seq
352 aa
AA seq
DB search
MPITILAPHAAAPVYARPDSDDEADAFDSDGDVDMEGATRASKRTRVSRKSIVTPGETVT
DDPQWMRGHGTYVPDGSSEIVSTVAGTVLKTNKLLSITPLRARYIPEIGDLVVGRIVEVQ
SKRWRVDISAPQLASLPLSAINLPGGILRKRTAVDELNIRTFFTEGDLLVAEVQSIYQDG
AASLHTRSLKYGKLRNGYFLSVSGTGGGGGRVGGVARSRRQVFTLSSTRGGEIDIILGVN
GYIWISKHVEPPNAGKDVSITRIEESVSKEVYSSQNDDIEVETRREIARVAGVIRALVES
GVRVDEDTVVKGYEAALELEFEEAGDGKQGVDYLGGERGKRVVEIALSNAGG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgccaattacgatccttgcgcctcacgccgctgcgcccgtgtacgcccgcccagactcc
gacgatgaggccgacgctttcgactccgacggtgacgtcgacatggagggcgcaacccgc
gcatcgaagcgcacccgcgtctcgcgcaagagcatcgtcacgcctggtgagaccgtcacc
gacgacccgcaatggatgcgaggtcacggcacctatgtccccgatggcagcagcgagatc
gtctccaccgtcgcgggtacagtgctgaagacgaacaagctcctctccatcacccctctt
cgcgcacgctacatcccagagattggcgaccttgtcgtcggccgcatcgtcgaggtacaa
tccaagcgttggcgcgtcgacatctctgcgccacaacttgccagcctgcccttgtctgcc
ataaacctgcctggaggtattctgcgcaaacggacggcggtcgacgagctgaacatcagg
acattcttcaccgagggcgacttgctcgttgctgaggttcaaagcatatatcaggacgga
gcggcgtcactacacacacgaagcttgaaatacggcaagctgcggaacggttatttcttg
tctgtgtctggcaccggtggcggtggcggcagagttggtggtgttgctcggtccagacgc
caagtcttcacgctgagctccacccgtggtggggagattgatatcatcctcggcgtcaac
ggctacatctggatatcgaagcatgtggagcctcccaatgcaggcaaggacgtcagcatc
acccgcatcgaggagagcgtgtcaaaggaggtctactccagccagaatgacgatatcgag
gtcgagacaaggcgggagattgccagagttgccggtgtgatacgtgcacttgttgaatct
ggtgtgcgcgttgacgaagatacggtcgtgaagggttacgaggctgctctcgaattggaa
ttcgaggaggctggcgacgggaagcaaggagtagactatcttgggggcgagcgggggaag
agagtcgtggagatcgctctcagcaacgcgggaggctga
DBGET
integrated database retrieval system
