Neofusicoccum parvum: UCRNP2_3642
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Entry
UCRNP2_3642 CDS
T03126
Name
(GenBank) putative cleavage and polyadenylation specifity factor protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
npa
Neofusicoccum parvum
Pathway
npa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
UCRNP2_3642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npa03021
]
UCRNP2_3642
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_3642
Transcription machinery [BR:
npa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
UCRNP2_3642
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
UCRNP2_3642
U7-dependent histone pre-mRNA processing factors
UCRNP2_3642
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
EOD49565
UniProt:
R1GDC7
LinkDB
All DBs
Position
Unknown
AA seq
746 aa
AA seq
DB search
MAAKRKAAAMSPGSDEPVDPADELLFYCLGGGNEVGRSSHIIQYKGKTVMLDAGMHPAYD
GLAALPFYDEFDLSTVDVLLISHFHIDHAASLPYVLSKTNFKGRVFMTHPTKAIYKWLIQ
DSVRVGNISSSSESRIQLYTEADHLSTFPQIEAIDYYTTHTISSIRITPYPAGHVLGAAM
FLIEIAGLKILFTGDYSREEDRHLISAEVPKNVKVDVLITESTFGIASHIPRLEREAALM
KSITSIINRGGRALLPVFALGRAQELLLILDEYWAKHPEFQKIPIYYASNIARKCMVVYQ
TYVYAMNDNIKRLFRERMEEAERNGDASKAGPWDFKYVRSLKSLERFDDVGGCVMLASPG
MMQNGVSRELLERWAPDQRNGVIMTGYSVEDKKQPVKVFSPANCEELRIPFKADKIAKVV
GKLAQIPPPMPYRPRQEDGAVEAEDEEEQQPQLISGVLVQNDFKMSLMAPEDLREYAGLT
TTTIVCRQHLTLSAAGIDLIRWALEGTFGALRQINGKDAAINGKTETNGNGEHKVDEDEA
DEEIDRSTTSFIVMDCVTIHCHNGGRVEVEWEGNMINDGIADAVLAVLFTVESSPAAVKQ
STSKHSHAHAHTPNPHAAADPRTRFDRLCMFLEAQFGASNTTPIAHPKLPESASGESTES
PAADQPAKTVSIAGLPLSEGDDAFSAAEQAELKRLHALGIPVPGIAIKVDKLVARVWLET
LDVECPNGVLRDRCEYVVKLVWKSDY
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaaagcgcaaggccgctgccatgtcgcccggcagcgacgagcccgtggacccc
gccgacgagctgctcttttactgcctgggtggcggcaatgaggtcggccggtcgagtcac
attatacagtacaagggcaagacggtcatgcttgacgctggcatgcacccggcatacgat
ggtcttgccgcactgcctttctacgacgagttcgacctcagcaccgtcgacgtgttattg
atcagccatttccacatcgaccatgcagcttctctcccttatgtgctgtcgaagacaaat
ttcaaaggcagagttttcatgacgcatccgaccaaggccatctacaaatggctcatccag
gacagtgtccgtgtcggcaacatctcatcctcgtcggaatcgcgaatccagctctacact
gaggcagaccatctttcgacatttcctcagatcgaagccatcgactactacacgacacat
actatctcttccatccgcattaccccttaccccgccggtcacgtcctcggagcagcaatg
ttccttattgagattgccggtcttaagatcctgttcaccggagactattcgcgcgaagag
gaccggcatttgatctccgcagaagtccctaagaatgtcaaggtcgatgtcctcattacc
gagagtactttcggtattgcgtcgcacattccgcgcctggagcgtgaggctgcgctcatg
aagtcaatcaccagcattatcaaccgtggtggtcgtgccctccttcctgtcttcgctctt
ggtcgtgcacaggagctgctgctcattctggacgagtattgggccaagcacccggagttc
caaaagatacccatctactacgcctccaacatcgcccgtaaatgcatggtcgtgtatcaa
acgtacgtctatgccatgaacgataacatcaagaggctattccgagagcggatggaggaa
gccgagaggaacggtgacgcatccaaggctggcccttgggactttaagtacgtgcgttct
ctaaagtcgcttgagcgctttgacgatgttggcggctgcgttatgctagcatcacctggc
atgatgcagaacggcgttagccgtgagcttctggagaggtgggcgcccgaccagcgcaac
ggcgtgatcatgactggttactccgtagaagacaagaaacaacccgtcaaggtgttcagc
cctgccaactgtgaggaacttcgtattccgttcaaggccgacaagatcgccaaggtcgtt
ggcaagcttgcgcaaataccgccaccaatgccatatcgtccgagacaagaagatggcgca
gtagaagctgaggacgaggaggaacagcaaccgcagctgatcagcggcgtgctggtgcaa
aatgacttcaagatgtcactcatggcacctgaagaccttcgcgaatatgcaggactgacg
accacgactatcgtgtgtcgccaacacctcacgctcagcgccgcaggaatcgacctcatc
cgctgggcgcttgaaggtacattcggcgcgctgaggcagatcaacggcaaggacgctgcc
atcaacgggaaaacggaaacaaacggcaacggcgagcacaaggtcgatgaagatgaggcg
gatgaggagattgaccgatccaccacgagcttcatcgtcatggactgcgtgaccatccac
tgccacaacggaggccgcgtcgaagtcgaatgggagggcaacatgatcaacgatggaatc
gccgacgccgttctcgccgtcctcttcacggtcgagagcagcccagccgccgtgaagcag
tcaacctccaagcactcccacgcccacgcccacacccccaacccccacgccgcggccgac
ccccgcacccgcttcgaccgcctctgcatgttcctcgaggcccagttcggcgcctccaac
accacgcccatcgcgcaccccaagctgcccgaaagcgcctccggcgagtccaccgagtcc
cctgccgccgaccagcccgccaaaaccgtgtccatcgccggcctcccgctgtccgaaggc
gacgacgccttctcggccgcggagcaggcggagctgaagcgcctgcacgcgctcggcatc
ccggtgccgggcatcgcgatcaaggtggacaagctggtggcgcgcgtgtggctggagacg
ctggacgtggagtgtccgaacggggtgttgagggataggtgtgaatacgtggtcaaacta
gtgtggaagtcggactactag
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integrated database retrieval system
