Neofusicoccum parvum: UCRNP2_4128
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Entry
UCRNP2_4128 CDS
T03126
Name
(GenBank) putative dead deah box rna helicase protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
npa
Neofusicoccum parvum
Pathway
npa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCRNP2_4128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_4128
Enzymes [BR:
npa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UCRNP2_4128
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
UCRNP2_4128
mRNA degradation factors
3'-5' decay
Ski complex
UCRNP2_4128
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4-like_stalk
Helicase_C
ResIII
DEXQc_Suv3
Motif
Other DBs
NCBI-ProteinID:
EOD49113
LinkDB
All DBs
Position
Unknown
AA seq
1145 aa
AA seq
DB search
MEHLAQAFERVSLAADSVNTSDPDWIDSVLGEQRPRKRTRRTKDELKQELEREFLTPSTS
LNTHWLNELQQRWDAPINYADLFELAPTQTRTIIRFTREGLEGRVTGYKEITVPASSATA
KNSTSLLRKPAKRADFVRGAAGFFPFAPGGLDGVEAIAAAEDEFLRNQQSEKAKKQGGLD
RVINFGVEGGLLEVPPGFARGLDFKKKPSTDQQNADEVEKALGEEPAPVESVDGILSEEV
DGVQPSAGESGDEEHQDDDDIDSLLPVEFPALAPRGNLSLSASKRANKEWAHMVDVNRDI
PNFRELVPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHM
TKAIYTSPIKALSNQKFRDFRNEFDDVGILTGDVQIRPEASCLIMTTEILRSMLYRGADL
IRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKQK
NIYVISTPKRPVPLEHYLWSNKVMHKIVDADKHFIEKGWKEANDVLSGKDKVKASKPEES
NANIWVHLVQHLRKENLLPACIFVFSKRRCEENADALANLDFCTASEKSAIHMIIEKSIA
RLKPEDRVLPQIRRLRELLSRGIAVHHGGMLPIVKEVVEILFAKTLVKILFATETFAMGL
NLPTRTVVFSGYRKHDGRQFRDLLPGEYTQMAGRAGRRGLDPVGSVIIVTPGAEEAPPAA
RLRQMILGDPTKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSENATQALLPEHEKAVK
LSEADLEKIKREACEICDVDLELCHQACMNYQRLTNELHLALLATPVGKRLFDARRLVVY
KKDGVRTAGMLLRDGTSKGHEPTVQIDLAEVLKGDPEALKLASDEFQPLCEAWTFEDWNE
VNMSKFIRDLTYRGLLEERRKQAEIAQNRKCLQCPKFLQHVNQNLQLLPDYEQRISVLKD
LGFIDEKSRVELKGKVACEIHSADELVLTELILENVLADYEPEEIAALLSAFVFQEKTDV
TPTLTPRLEQGQAKIVEISEKVNHIQTLHQVILSADDSNDFVSRPRFGMVEVVYEWARGM
SFNRITDLTDVMEGTIVRVITRLDETCREVKNAARIIGDPTLYTKMQTCQELIKRDICNA
ASLYL
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggagcacctggcccaggccttcgaacgcgtcagcctggccgccgactcggtcaacacg
agcgatcctgactggatagactcggttctgggcgagcagcggccgcgcaaacgaacgcga
cggaccaaggacgagctgaagcaggagctggagagagagttcctgaccccgtcaacctca
ctcaacacccattggctcaatgaactgcagcaaagatgggacgcaccgatcaactacgcc
gacctcttcgagcttgcacccacgcagacgcgcaccatcatccgcttcacccgggagggc
ctggaaggtcgtgttacaggctacaaagagatcaccgttcctgcgagcagcgccaccgca
aagaactccacctcgctcctaaggaagccagcgaagagggccgatttcgtccgcggtgct
gccggcttctttcccttcgcccccggcggtctcgacggcgtcgaggcgatagcagctgcg
gaagatgagttcttgcggaaccaacaatcggagaaggcaaagaaacagggtggactcgac
cgtgtcatcaacttcggcgtcgaaggcgggctcctagaagttcccccgggcttcgctcgc
ggcttggacttcaagaagaagcccagcacagaccagcagaatgccgatgaggtggagaaa
gccttgggcgaggaacctgcccctgtcgaatcagtagacggcatactctccgaagaggtc
gatggcgtccagccgtccgccggagagtctggcgacgaggagcaccaggacgacgatgat
attgactctttacttcctgttgaattcccagctcttgctccacgtggcaatctctccttg
tcagcttcgaagagagccaacaaagaatgggcgcacatggttgatgtcaatcgtgacatt
cctaactttagggagctcgtgccagacatggcgcgagagtggccattcgagttggatact
ttccagaaagaagctgtgtatcatcttgagaatggagactctgtttttgtcgctgcccac
acttccgccggcaagacagttgtagcggagtatgctatcgcgctcgcagccaagcacatg
accaaggctatctacacctctcccatcaaagctctcagcaaccaaaagttcagagatttc
aggaacgagttcgatgacgttggcattctcacgggcgatgtccaaattcgcccagaagcc
agctgtctaatcatgacgaccgagattctccgaagcatgctgtaccgtggagcagatctc
attcgagacgtcgagttcgtcattttcgacgaagtccactacgtcaacgacctagaacgc
ggagtggtctgggaagaggtcatcatcatgctgccggaacacgttacccttattcttctc
tcggcgaccgtcccgaacacctacgagtttgcgtcatgggttgggaggaccaagcaaaag
aacatttacgttatctcaacgccgaagcgccccgttcctcttgagcactatctctggtca
aacaaggtcatgcacaagatcgtcgacgctgacaaacacttcattgagaagggctggaag
gaagccaatgatgttctttcgggcaaagataaagtcaaggcgtccaagccagaggagtct
aacgcaaacatctgggtgcatctcgtccagcacttgcgtaaggagaatctgctgccggcc
tgcatcttcgtcttctcaaagcggcgctgcgaggagaatgcggatgcccttgcaaactta
gatttctgcacggcttccgagaaaagcgccattcacatgatcattgagaagtccattgct
cgcctcaagccagaggacagagtgcttccacagatcaggcgactccgcgagctacttagc
cgaggcatcgctgttcatcacggtggaatgctgcccattgtgaaggaagtggtggaaata
ctgtttgcaaagacgctggtcaagattctgtttgcaacagagacttttgccatgggtctc
aatctccctaccaggaccgtggtcttctcgggctatcggaagcacgacggccgccagttc
cgagatcttctgccgggagagtacacgcagatggctggccgcgcgggtcgtagagggctc
gatcccgtgggctctgtcatcattgtcacaccaggcgctgaggaagcgcctccggcggct
cgtctgcgacagatgatcctcggagaccctaccaagcttcgctcgcagtttaggctcacg
tacaacatgatactgaaccttctgagggtggaagccttgaaaatcgaagagatgatcaaa
cggagtttcagcgaaaacgccacacaggccctccttcccgaacacgagaaggctgtcaag
ctatctgaggcagatcttgagaaaatcaagcgagaggcatgtgagatctgcgacgttgac
ctcgagctttgccaccaagcttgcatgaattaccaacgtctgaccaatgagctccacctg
gcgctcctcgccaccccggttgggaaacgcttattcgacgccagacgtttggtagtatac
aagaaggacggtgttcgcaccgctggcatgctcctgagggatgggaccagcaagggccac
gagcccaccgtgcagatcgacttggccgaagtgctgaagggtgatccagaggcactcaag
ctagctagcgacgagttccagccactgtgtgaagcctggacctttgaagattggaacgaa
gtcaacatgtcgaagttcatcagagacttgacctacagaggtctgctggaagagcgtcgc
aagcaagctgagatcgctcagaaccgcaagtgcttgcaatgccccaaatttctccagcac
gtgaatcagaacctacagctccttccagactacgaacagcgcatttctgtgctgaaggac
cttggcttcatcgacgagaagtcgagagtcgaactgaaaggcaaagttgcctgcgagatc
cactccgccgatgaactggtgcttacggagctgattctagagaacgttctagctgactac
gagccagaggagatcgccgcgttgctgtctgcctttgtcttccaggagaagacggacgtt
acgcccacattgacgcctagattagagcagggccaggccaagatcgtcgagatctcggag
aaggtcaaccacatccagacgctgcaccaagtcatcctctctgctgatgattcgaatgac
tttgtcagccggccgcgttttgggatggtggaagtggtgtacgagtgggctcggggcatg
tcgttcaaccgcattacggacctgacagacgtcatggaaggcacgatagtacgggtcatc
acgcggcttgatgagacctgcagggaggtcaagaacgccgcacgcatcatcggcgacccg
acgctgtacacgaagatgcagacgtgccaggagctgatcaagcgcgacatctgcaacgcg
gcgagcttgtacttgtag
DBGET
integrated database retrieval system
