Neofusicoccum parvum: UCRNP2_5593
Help
Entry
UCRNP2_5593 CDS
T03126
Name
(GenBank) putative tfiih complex helicase protein
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
npa
Neofusicoccum parvum
Pathway
npa03022
Basal transcription factors
npa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
UCRNP2_5593
09124 Replication and repair
03420 Nucleotide excision repair
UCRNP2_5593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npa03021
]
UCRNP2_5593
03400 DNA repair and recombination proteins [BR:
npa03400
]
UCRNP2_5593
Enzymes [BR:
npa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UCRNP2_5593
Transcription machinery [BR:
npa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
UCRNP2_5593
DNA repair and recombination proteins [BR:
npa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
UCRNP2_5593
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
Motif
Other DBs
NCBI-ProteinID:
EOD47658
UniProt:
R1EIP3
LinkDB
All DBs
Position
Unknown
AA seq
814 aa
AA seq
DB search
MATKRKATGPTGGAAKRVASGVNTPISMASSDDEYTEPTAEEVEEQEAMQQLVERFHSKK
KSGAAPVRRLDTVSNFFHGHDYSSLDLKKEHTDRPLWVTPEGKIILESFSPYFKQAERFL
INIAEPQSRVSLMHEYSLTANSLFAAVSVGLSTNEIITQLEKLSKTPLDDEVKEFIINST
KSFGKVRLVLKQTKYFVESSDPDILRTLLRDSIIGPCRIDNTEGLMKSTAAKKGDLVIPG
TNMAAGAKQAAQAQAQPEDADQMMNVLREEDDEEEEDQVHSFQIDGPKVQTVSKRCRAIG
LPLTEEYDFRNDYVNANLEIDIRPGVEIRPYQEQALTKMFGNGRARSGIIVLPCGAGKTL
VGITAACTVRKGCIVLCTSTMSVLQWRDEFIKWSNINPSDIAVFTAEQKDFFSGNTGVLI
STYNMIAMNRTRSYDSQKVMDFITQREWGLMVLDEVHVVPADMFSRVTHAVPSHAKLGLT
ATLLREDDKIVDLNFLIGPKLYEANWQELSENGFIAKVICSEVWCQMTTEFYAEYLKAKT
VNKKSLLYTMNPRKFQAAQFLIDYHEKRGDKTIVFSDNVYALKAYARRLNKAFIYGGTSN
QERQTVLQNFMYNEDVKTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA
KRRNDEGFNAFFYSLVSKDTTEMFYSSKRQAFLVDQGYSFRVITRLQGIENLPGLVYATP
QERRELLTDVMLQNDVAGEVEKNDGDLFDRRMGNRFRKGVRRTAGTLGELSGGQDMAYIE
YNRDKNKELRASGNQTLKKLKRSLGKQNKKVLPS
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaagcgcaaggcgacgggcccgactggcggcgccgccaagagggtggcatct
ggcgtgaacacgcccatcagcatggccagcagcgatgacgagtacactgagccgaccgcg
gaggaggtcgaggagcaagaggcaatgcagcagctggtcgagcgcttccattccaagaag
aagagtggcgccgcgcctgtcaggaggttggacactgtctccaacttcttccacggccac
gactactcgagcctggacttgaaaaaggagcacaccgaccgcccgctctgggtgaccccc
gagggcaagattatcctagagagcttttcgccgtatttcaagcaagccgagagatttctc
atcaacatcgccgagccccagtcgcgtgtgtcactcatgcatgaatactccctcaccgcc
aatagcctgttcgccgccgtctcggtcggcctctcaaccaacgagatcatcacccagctc
gagaagctgtccaagacgcctttggacgacgaggtcaaggagttcatcatcaactctacc
aagtcattcggcaaggtccgactggtcctcaagcagaccaagtacttcgtcgagagttcc
gacccggacattctccgcaccctgctaagggattctatcattggaccgtgcagaattgat
aatacggagggcctgatgaaaagcactgcggccaagaagggagacctggttattcctggc
accaacatggccgccggggcgaagcaagccgctcaagcccaagcccaacccgaggatgct
gaccaaatgatgaacgtgctgagagaggaagatgacgaggaggaagaggaccaagtccac
tcctttcaaattgacggccccaaggtccagacggtgtcgaagcggtgtcgggcaattgga
ctgccgctgactgaagagtacgattttcgcaatgactacgtcaatgccaatttggaaatt
gatatcaggcctggtgttgagattcggccttaccaagagcaggcgctcaccaagatgttc
ggtaacggtcgtgctcgtagtggtatcatcgtcttgccctgcggagccggcaagactcta
gtcggtatcacagctgcctgcaccgtgagaaagggctgcatcgtgctctgcacaagcacc
atgtccgtcctccagtggcgtgacgagttcatcaagtggtccaacatcaaccccagcgac
attgccgtcttcactgccgaacagaaggacttcttctcgggaaacaccggtgtcctcatc
tcaacgtacaacatgattgcgatgaaccggacccggtcatacgactcgcaaaaggtcatg
gacttcatcacgcaaagagagtggggactcatggttcttgacgaggtgcacgtcgtccct
gcggacatgttcagtcgagtcacacacgctgtaccgtcgcacgccaagctcggtctcacg
gcgaccttgctccgtgaggatgacaagatcgtcgacttgaactttctgattggcccgaag
ctgtacgaggccaactggcaagagttgtctgaaaatggcttcattgccaaggtcatctgc
tccgaagtctggtgtcaaatgacaacagagttttacgcagagtacctgaaggccaaaacg
gtgaacaagaagtcgcttctgtacacgatgaacccccgcaagttccaggctgcccagttc
ctcatcgactatcatgagaagagaggagataagaccatcgtcttctcagacaatgtgtac
gccctgaaggcgtacgctagaaggctcaacaaagctttcatttacggtggcacttcgaac
caggagcggcagacggtccttcagaacttcatgtacaacgaggacgtcaagacgatcttc
ctttccaagattggagacacatctctcgacttgcccgaagcgacatgcctcattcagatt
tcatcgcactacggctcgcgtcgtcaggaggctcagcgtctaggccgcatcctgcgggct
aagcgcaggaatgatgagggcttcaacgcgttcttctactcgctcgtctcgaaggataca
actgaaatgttttattcttcgaaacgacaggccttcctagtggaccagggctactccttc
cgtgtgattacacgccttcaaggtatcgagaatctcccaggccttgtgtacgccactcca
caggaacgcagggagctgcttacagacgtcatgctgcagaatgatgtcgcgggcgaggtt
gagaagaatgatggtgacttattcgacaggaggatgggcaaccggttcaggaagggagtc
cgccgcacggctggaacgctgggcgagctcagtggcggtcaggacatggcgtacattgag
tacaacagagacaagaacaaggagctcagggcgtccggcaaccagacgctcaagaagctc
aaacgcagcctggggaagcaaaacaagaaggtgctaccgtcgtga
DBGET
integrated database retrieval system
