Neofusicoccum parvum: UCRNP2_7247
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Entry
UCRNP2_7247 CDS
T03126
Name
(GenBank) putative dead deah box rna helicase protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
npa
Neofusicoccum parvum
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_7247
03041 Spliceosome [BR:
npa03041
]
UCRNP2_7247
03036 Chromosome and associated proteins [BR:
npa03036
]
UCRNP2_7247
Enzymes [BR:
npa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UCRNP2_7247
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
UCRNP2_7247
mRNA cycle factors
Common to processing body (P body) and stress granule
UCRNP2_7247
Spliceosome [BR:
npa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
UCRNP2_7247
Chromosome and associated proteins [BR:
npa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
UCRNP2_7247
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
EOD46035
UniProt:
R1G3R0
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MSSEPDKTFDTAEMSAALSEAGSNAGSDCDKPVASEPPPIVPIEGAADRAREHGFAPPVA
YDYDNYNATTKEQRDATLAEGRYIEPSWAATAARYEWDDDYGEVGPPMPELEQELFRQET
VMRRGNAFQVLQYKIKQEGPVQIAPVRNFEDAGLHPVMLDNVTRLCQYEMTTPIQAYTIP
AVLQGHDVVGIAQTGSGKTGAYLIPVLSRLMGKAKKLAAPRPSLATFNPDTDRVRAEPLV
LVVCPARELAAQIFDEARRLCYRTQLRPCVIYGGGPPKTQRMELEKGCDVLIATPGRLCD
FMDKPSLLSLNRVKYTIIDEADEMLDDDWEDELKKIMAGGDTNEDADHAYLMFSATFPKE
ARLLARQHLAEDYIRVRVGRAGSTHNNIAQKIIWVEDSAKDKALHDLLFSMPPGRTIVFV
NSKRKADLVDDFLFNRGLPSTSIHADRTQREREDALRSFKVGTAPILVATGVTARGLDIK
NVMHVINYDLPSTQYSGIREYVHRIGRTARIGNEGLATSFYNDRNEDLAEDLCKVLLERE
QEIPDFLQDHAPAPGESIDFDDDTDEEEEATDAASNADGGASETNGDGFKPDGAFKADDA
AATW
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggagcccgacaagaccttcgacaccgccgagatgtcggccgctctgagtgag
gctggcagcaacgccggcagcgactgtgacaagcccgtggcttcggagcctccgccgatt
gtccccattgaaggtgctgctgaccgcgctcgcgagcacggcttcgctcctccggttgct
tatgactacgacaactacaacgccaccaccaaggagcagcgcgacgctacccttgctgag
ggccgctacattgagccgagctgggccgccactgctgctcgatatgagtgggacgacgac
tacggtgaggtcggcccgcccatgcctgagcttgagcaagagctcttccgccaggagacc
gtcatgcgtaggggcaacgcatttcaggttttgcaatataagatcaagcaggagggccca
gtccagattgccccggttcgcaacttcgaggatgctggtcttcacccggtgatgttggac
aacgtcactcgtctgtgccagtatgagatgacgacgcctatccaggcctacaccattcct
gccgttctgcagggccatgacgtcgttggcattgctcagactggttccggcaagactggt
gcctacctcatccccgtcttatcccgcctgatgggcaaggccaagaagcttgccgcccct
cgcccgagtctggctacgttcaacccggacacggaccgcgttcgtgccgagcctctggtt
ctggtcgtctgcccggctcgcgaacttgccgcgcagatcttcgatgaggctcgtcgcctt
tgctaccgtacccagctgaggccttgcgtcatctacggtggtggcccgcccaagacccaa
cgcatggagttggagaagggttgtgatgtcctcatcgccactcctggtcgcctctgcgac
ttcatggacaagccatccctgctctctttgaaccgtgtcaagtacactatcattgacgag
gccgatgagatgcttgatgacgactgggaggatgagttgaagaagatcatggctggtggt
gataccaacgaggatgctgaccatgcctacctcatgttctcggctaccttccctaaggag
gcccgcttgttggctcgccagcacctcgcggaggactacatccgcgtccgcgttggtcgc
gccggttccacgcacaacaacattgcccagaagatcatctgggttgaggactcggccaag
gacaaggcactccacgacctcttgttctcgatgccgcccggccgtaccatcgtcttcgtc
aactccaagaggaaggctgacttggttgatgacttcctgttcaaccgtggcttgccctcg
acctcgatccacgctgatcgcactcagcgcgagcgcgaggacgccctccgctcgttcaaa
gtcggcaccgcgcccattctggttgctaccggtgtcaccgcccgtggtcttgacatcaag
aacgtcatgcacgtcatcaactacgacctgccctccacccagtatagtggaattcgtgag
tacgtccaccgcattggccgtactgctcgtatcggtaacgagggccttgccacctcattc
tacaacgacaggaacgaagatctggccgaagacctctgcaaggtcctcctagagcgtgaa
caggagatccctgacttcctccaagaccatgctcctgctccgggcgagtcaatcgacttc
gacgacgacactgacgaggaagaggaagctactgatgcggcttccaatgctgacggtggt
gcgtccgagactaatggtgacggcttcaagcctgacggcgcattcaaggctgacgacgcc
gctgctacctggtaa
DBGET
integrated database retrieval system
