Neofusicoccum parvum: UCRNP2_8737
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Entry
UCRNP2_8737 CDS
T03126
Name
(GenBank) putative 3 -5 exoribonuclease csl4 protein
KO
K07573
exosome complex component CSL4
Organism
npa
Neofusicoccum parvum
Pathway
npa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCRNP2_8737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_8737
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
UCRNP2_8737
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
UCRNP2_8737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
PCB_OB
S1
RRP4_S1
Motif
Other DBs
NCBI-ProteinID:
EOD44558
UniProt:
R1E9W2
LinkDB
All DBs
Position
Unknown
AA seq
206 aa
AA seq
DB search
MSSLPALALPGQPLGGAASYAPGPGIHIQDQQLYASLLGPVSATKPPKRPSAAGPSSSMP
ALSIARPDAHAAVGASAATNTLPEVDAVVLARVTRLTPRQATVEILVVGEAVCREGFQGI
IRREDVRATEKDRVKIGDMFRVGDIVRGVVISLGDQSNYYLSTATNELGVVMAKSEAENQ
MYPISWKEFRDPKTGLTESRKVAKPF
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccctgcctgccctcgccctccctggccagccgctcggcggcgccgccagctac
gcgcccggcccgggcatccacatccaagaccagcagctctacgcctcgctgctcggcccg
gtcagtgcgacgaagccgccgaaacggccctccgccgccgggccgtccagcagcatgccg
gcgctgtcgatcgcgcgccccgacgcgcacgccgccgtcggcgcgtcggccgccaccaac
acgctgcccgaggtcgacgcggtcgtgctggcgcgggtgacgcgcctgacgccgcgccag
gcgacggtcgagatactggtcgtgggcgaggcggtgtgccgcgagggcttccagggcatc
atccgccgcgaggacgtgcgggcgacggagaaggaccgcgtgaagattggggatatgttc
agggtcggggacatcgtgcggggcgttgtgatttcgctgggtgaccagtcgaattattac
ctctcgaccgcaacgaatgagttgggcgtcgtgatggcgaagagcgaggcggagaaccag
atgtatccgattagctggaaagaatttagggatccgaagacgggtctgacggagagcagg
aaggttgcgaagcctttctga
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