Neofusicoccum parvum: UCRNP2_9000
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Entry
UCRNP2_9000 CDS
T03126
Name
(GenBank) putative atp-dependent rna helicase dob1 protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
npa
Neofusicoccum parvum
Pathway
npa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCRNP2_9000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_9000
03041 Spliceosome [BR:
npa03041
]
UCRNP2_9000
03009 Ribosome biogenesis [BR:
npa03009
]
UCRNP2_9000
03016 Transfer RNA biogenesis [BR:
npa03016
]
UCRNP2_9000
Enzymes [BR:
npa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UCRNP2_9000
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
UCRNP2_9000
Spliceosome [BR:
npa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
UCRNP2_9000
Complex C
U4/U6.U5 tri-SnRNP related factors
UCRNP2_9000
Ribosome biogenesis [BR:
npa03009
]
Eukaryotic type
Pre-60S particles
Helicases
UCRNP2_9000
Transfer RNA biogenesis [BR:
npa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
UCRNP2_9000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
DEAD
Helicase_C
DEXQc_Suv3
ResIII
Epiplasmin
nSTAND3
ATPase_2
VasI
Motif
Other DBs
NCBI-ProteinID:
EOD44282
UniProt:
R1EA27
LinkDB
All DBs
Position
Unknown
AA seq
1072 aa
AA seq
DB search
MDELFDVFDGEPQPGQGQQPKQSKKNKKRQANGSVKTSNDNPDASASDAAMTDAPPASQD
DDAAANGAADQLAAKRLRRDEPDPVVTDSFETEQSREVAAAAGLQAQKDGTAVVLSHQVR
HQVALPPDYDYVPISEHTPPEQPAREYPFTLDPFQQVSVHSIQRNESVLVSAHTSAGKTV
VAEYAIAHCLKNNQRVIYTSPIKALSNQKYREFMADFGDVGLMTGDVTINPTATCLVMTT
EILRSMLYRGSEIMREVAWVIFDEVHYMRDKSRGVVWEETIILLPDKVRYVFLSATIPNA
MQFAEWITKTHNQPCHVVYTDFRPTPLQHYFFPAGADGIHLIVDEKGVFREDNFQKAMQT
ISDKQGDDPADAMAKRKGKGKDKKLNKGGQKGPSDIYKIVKMIMMKNYNPVIVFSFSKRE
CENLALQMSSLSFNDDSEKQLVTKVFNSAIESLSEQDRELPQIQHLLPLLKRGIGVHHSG
LLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWVTPSEFI
QMSGRAGRRGLDDRGIVIMMIDEKMEPTVAKEIVRGEQDKLNSAFYLSYNMILNLMRVEG
ISPEFMLERCFFQFQNTASVAGLERHLVELEQEKASMQIPDEGTIRDYYDLRQQINQYTK
DMREVITHPNYCLQFMQSGRLVRIKHKDFDFGWGAVVNHTHRKPGKGQKASDIPPQQSYV
VDVLLQVASDVTFAPQLNQDLPQGVRPPAAGEKGKMEVVPVLLSCIDSIGHLRIFLPSDL
KSADQRNSVRKALEEVKKRFPDGIAILDPIENMGITDDNFKKLLRKIEVLECRMLSNPLH
NSPRLPDLYDLYASKVELGNKMKEVKKQINNALSIIQLDELKCRKRVLRRLGFINEADVV
QLKARVACEISTGDELVLSELLFNGFFNELTPEQCAAALSCFIFEEKSNETPTLREELAK
PFRDIQAQARVIAKVSQESKLAINEDEYVDGFKYQLMEVVFAWSKGATFAEICKMTDVYE
GSLIRLFRRLEELLRQIAQGAKVMGNSDLEQKFEKALEAIRRDLVAAQSLYL
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggacgagctcttcgacgtcttcgacggcgagccgcagcccggccagggccagcagccc
aagcagtcgaagaagaacaagaagagacaggcaaatggctccgtcaagacctcgaacgac
aaccccgacgcttctgcaagcgatgctgccatgaccgacgcaccgcccgcgtcccaggac
gacgatgctgctgccaacggtgcagcggaccagctggccgcgaagcgcctgcgacgcgac
gagcccgaccctgttgttacagacagcttcgagaccgagcagtctcgcgaggtcgccgcc
gccgccggcctgcaggcccagaaggacggtaccgccgtcgtgctgtcccatcaagtcagg
caccaggttgctctgccgccggattatgactacgttccaatctctgagcacacgccgccg
gagcagcccgctcgcgagtacccgttcactctggatcccttccagcaggtgtcggtccac
tcgatccagcgcaacgagagtgtactagtatctgcccacacgtccgctggtaaaaccgtg
gtagccgaatacgccatcgcccattgccttaagaacaaccagagagtaatctacacgagt
ccgatcaaagccctcagcaaccaaaagtacagagagttcatggccgactttggcgacgtt
ggtctcatgaccggagacgttaccatcaaccctaccgccacgtgtttggtcatgaccacg
gagattctgcgctccatgctttacaggggatccgagatcatgcgcgaagttgcttgggtc
atattcgatgaggtgcactacatgcgcgataagtcccgcggtgttgtttgggaggagacc
atcattctcctgcccgacaaagtccgctacgtcttcctttccgccacgattccgaacgct
atgcaatttgccgaatggatcaccaagacccataaccagccctgccacgttgtttatacg
gacttccgacccactcccctgcagcattacttcttccccgccggcgccgacggtatacat
ttgatagtggacgagaagggtgtgttcagggaagacaattttcagaaagccatgcagacc
atcagcgacaagcagggagatgatcccgccgatgccatggcaaagcgcaagggcaaaggc
aaggacaagaagcttaacaagggcggacagaagggaccatcggacatctacaagatcgtg
aagatgatcatgatgaaaaactacaatccggtcattgtcttcagcttcagcaagagggag
tgcgaaaatcttgcgttgcagatgagctcgctttccttcaacgatgattcggaaaagcaa
ctggttacaaaggtgttcaacagtgcgatcgaatccctgagtgagcaggacagagaactg
cctcaaatccagcatctgctgccgttgctcaagcgaggcatcggtgttcatcattccggt
ctactgcctatcctcaaggagaccatcgagattctcttccaggaaggtctcattaaagtt
ctcttcgcgacggagacgttctccattggtctgaacatgcctgcgaagacggtagtcttc
acgagtgttcgcaaattcgacggtgtttctcagcgctgggtgacgccatctgaattcatc
cagatgtccggacgtgctggaagacgtggtctagatgaccgtggtatcgtcatcatgatg
attgacgagaagatggagccgactgtagcaaaggagattgtgcgaggcgagcaggacaag
ctcaattctgccttctacctgagctacaacatgatccttaacctcatgcgcgttgagggc
atctctcccgagttcatgcttgaacggtgtttcttccaattccagaatactgccagcgtt
gctggtctcgaaagacatttggttgagttggagcaggagaaggctagtatgcagattccg
gacgagggcaccattcgcgactactacgacctgcgacaacagattaaccaatacacgaag
gacatgcgggaagtcatcacacaccctaactactgcttgcagttcatgcagtcgggtcgt
cttgttcgcataaagcataaggattttgatttcggctggggtgccgtggtcaaccacacg
caccggaagcccggcaagggtcaaaaggcttcagacatcccgccgcagcagtcctatgtt
gtcgatgtgttgctccaggtggcaagcgatgtgaccttcgccccacagcttaatcaagac
ctgcctcagggtgtgcgtccgccggcagcgggtgagaagggcaagatggaggttgtaccg
gttttgctgtcttgcattgactcaattggacacttgcggatcttcctcccttccgatctc
aagtctgccgatcagaggaattccgttcgcaaggcgcttgaagaagtcaagaaaagattc
cctgatggcatcgccatcctcgacccaatcgagaacatgggaattaccgacgacaacttc
aagaaacttctccggaagatcgaagtgctcgagtgccggatgctttccaacccgttgcac
aactcaccaagacttccagacttgtacgacctgtacgcatcaaaggtcgagctcggcaac
aagatgaaggaggtcaagaagcagatcaacaacgcgctgtccatcatacagctagacgaa
ctcaagtgtcggaagcgtgtgttgcgacggctcgggttcatcaacgaagccgatgttgtg
cagctcaaggccagagtggcgtgcgagatcagcacaggagacgagctcgtgctgagcgag
cttctgttcaacggcttcttcaacgaactcacgcctgagcaatgcgctgcggctttgagc
tgcttcatcttcgaggagaagagcaacgagacgccgacgctgagggaggaactggcgaag
ccgttccgcgacatccaggcacaggcgcgcgtcattgcgaaggtctcgcaggagagcaag
ctggcgatcaacgaggacgagtacgtggatggcttcaagtaccagttgatggaggttgtc
ttcgcatggtcgaagggagcaacgttcgcagagatttgcaaaatgacggacgtctacgaa
ggcagcctgatccgtctcttccgacgtctcgaggagcttctccggcagattgcgcagggc
gcgaaggtgatgggcaacagcgacctggagcagaagttcgaaaaggcactcgaggcgatc
aggcgagatctcgtggctgcgcagtccctttacctgtag
DBGET
integrated database retrieval system
